Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g858 ATGCACTTTCATGACTGTTTTGTCAGGGGCTGTGATGCTTCTATCCTTATAAATGGAACTTCCACCGAGAAAACAACCGTACCAAACAGTCTGTTAAATGGATATGATGTTATTGATGATGCCAAGACCCAGCTCGAAGCTGCTTGCCCTGGAGTGGTCTCTTGCGCTGATATTCTTGCCCTCGCTGCCCGCGACTCTGTGGTTCTGACTAAAGGACTAACGTGGAAAGTGCCTACGGGACGTAGAGATGGGCGAGTTTCACTGGCATCTGATGTTAACAATTTGCCCAGCCCTCGAGACTCTATTGAAGCCCAAAAGCAAAAGTTTGCTGACAAGGGTCTCACTGATCAAGATCTCGTTACTCTTGTTGGAGGACACACCATTGGAACTTCAGCATGCCAATTTTTCAGATACAGGCTATACAACTTCATAAGCGCATTGCACTAG 447 46.53 MHFHDCFVRGCDASILINGTSTEKTTVPNSLLNGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTKGLTWKVPTGRRDGRVSLASDVNNLPSPRDSIEAQKQKFADKGLTDQDLVTLVGGHTIGTSACQFFRYRLYNFISALH* 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14468487 14469810 + Vvi12g858 Vvi12g858 773381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g858 148 ProSitePatterns Peroxidases proximal heme-ligand signature. 118 128 IPR019793 -
Vvi12g858 148 Gene3D Peroxidase, domain 2 96 144 - -
Vvi12g858 148 Gene3D - 1 95 - -
Vvi12g858 148 PRINTS Plant peroxidase signature 33 46 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g858 148 PRINTS Plant peroxidase signature 52 62 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g858 148 PRINTS Plant peroxidase signature 71 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g858 148 PRINTS Plant peroxidase signature 117 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g858 148 PANTHER PEROXIDASE 1 145 - -
Vvi12g858 148 SUPERFAMILY Heme-dependent peroxidases 1 143 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi12g858 148 PANTHER PEROXIDASE 25-RELATED 1 145 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g858 148 PRINTS Haem peroxidase superfamily signature 53 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g858 148 PRINTS Haem peroxidase superfamily signature 71 83 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g858 148 PRINTS Haem peroxidase superfamily signature 118 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g858 148 ProSiteProfiles Plant heme peroxidase family profile. 1 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g858 148 Pfam Peroxidase 1 143 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g858 K00430 - vvi:100262247 292.737