Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g859 ATGCACTTCCATGACTGCTTTGTCCAGGGTTGCGATGCTTCCATCCTCATCGATGGGTCGTCCACCGAGAAAACGGCTGGGCCGAATCGTCTGTTGAGAGGATATGATGTTATTGACGATGCCAAGACACAGCTCGAAGCCGCTTGCCCTGGAGTGGTCTCTTGCGCTGATATTCTTGCCCTCGCTGCCCGCGACTCTGTGGTTCTGACTAAAGGACTAGTGTGGAAAGTGCCTACGGGACGTAGAGACGGGCGAGTTTCATTGGCATCTAATGTTAACAATTTGCCTGGCCCTCGCGACTCTGTTGAAGTCCAAAAGAAAAAGTTTGCTGACAAGGGTCTCAATGATCAAGATCTGGTTACTCTTGTTGGAGGACACACCATTGGAACTGCAGCATGCCAAGCCTTCAGATACAGACTATACAACTTCACAGACGGGTTGCACTGGACACTGGTAGCTCAAACACATTTGACGCATCATACTTTACAAACTTGA 495 49.49 MHFHDCFVQGCDASILIDGSSTEKTAGPNRLLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTKGLVWKVPTGRRDGRVSLASNVNNLPGPRDSVEVQKKKFADKGLNDQDLVTLVGGHTIGTAACQAFRYRLYNFTDGLHWTLVAQTHLTHHTLQT* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14484464 14485953 + Vvi12g859 Vvi12g859 773382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g859 164 ProSitePatterns Peroxidases proximal heme-ligand signature. 118 128 IPR019793 -
Vvi12g859 164 SUPERFAMILY Heme-dependent peroxidases 1 149 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi12g859 164 Pfam Peroxidase 1 143 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g859 164 Gene3D - 1 108 - -
Vvi12g859 164 Gene3D Peroxidase, domain 2 109 162 - -
Vvi12g859 164 ProSiteProfiles Plant heme peroxidase family profile. 1 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g859 164 PANTHER PEROXIDASE 25-RELATED 1 145 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g859 164 PRINTS Plant peroxidase signature 33 46 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g859 164 PRINTS Plant peroxidase signature 52 62 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g859 164 PRINTS Plant peroxidase signature 71 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g859 164 PRINTS Plant peroxidase signature 117 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g859 164 PRINTS Haem peroxidase superfamily signature 53 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g859 164 PRINTS Haem peroxidase superfamily signature 71 83 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g859 164 PRINTS Haem peroxidase superfamily signature 118 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g859 164 PANTHER PEROXIDASE 1 145 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g859 K00430 - vvi:100257139 293.123