Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g860 ATGCACTTTCATGACTGTTTTGTCAGGGGCTGTGATGCTTCTATCCTTATAAATGGAACTTCCACCGAGAAAACAACAGTACCGAACAGTCTGATAAATGGATATGATGTTATTGATGATGCCAAGACCCAGCTCGAAGCCGCTTGCCCTGGAGTGGTCTCTTGCGCTGATATTCTTGCCCTCGCTGCCCGCGACTCTGTGGTTCTGACTAAAGGACTAACGTGGAAAGTGCCTACGGGACGTAGAGATGGGCGAGTTTCATTGGCATCTGATGTTAACAATTTGCCTAGCCCTCGCGACTCTATTGAAGCCCAAAAGCAGAAGTTTGCTGACAAGGGTCTCACTGATCAAGATCTCGTTACTCTTGTTGGAGGACACACCATTGGAACTTCAGCATGCCAATTCTTCAGTTATAGACTATACAACTTCACTCAAACACATTTGACGCATCTTTCTTTACAAACTTGA 468 45.51 MHFHDCFVRGCDASILINGTSTEKTTVPNSLINGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTKGLTWKVPTGRRDGRVSLASDVNNLPSPRDSIEAQKQKFADKGLTDQDLVTLVGGHTIGTSACQFFSYRLYNFTQTHLTHLSLQT* 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14508754 14511319 + Vvi12g860 Vvi12g860 773383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g860 155 ProSitePatterns Peroxidases proximal heme-ligand signature. 118 128 IPR019793 -
Vvi12g860 155 PRINTS Haem peroxidase superfamily signature 53 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g860 155 PRINTS Haem peroxidase superfamily signature 71 83 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g860 155 PRINTS Haem peroxidase superfamily signature 118 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g860 155 PANTHER PEROXIDASE 25-RELATED 1 146 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g860 155 Pfam Peroxidase 1 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g860 155 PRINTS Plant peroxidase signature 33 46 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g860 155 PRINTS Plant peroxidase signature 52 62 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g860 155 PRINTS Plant peroxidase signature 71 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g860 155 PRINTS Plant peroxidase signature 117 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi12g860 155 SUPERFAMILY Heme-dependent peroxidases 1 148 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi12g860 155 PANTHER PEROXIDASE 1 146 - -
Vvi12g860 155 ProSiteProfiles Plant heme peroxidase family profile. 1 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi12g860 155 Gene3D - 1 113 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g860 K00430 - vvi:100246878 292.352