Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g867 ATGGCTGCAACTTCTGCTGCTGTGTTGAATGGGCTGGGCTCTCCGTTCTTGACTGGAGGCAAGAGGAGCCAGAGCTTGTTGTCTGCCGGGGTTGCAGCCAAAGCTGGTGCTGCTGTGCCTGCCCCCAGGAGGCTCATTGTCGTCGCTGCTGCCCCTAAGAAGTCGTGGCTTCCTGGTGTTAAAGCTGGTGGCAACCTCGTCGACCCTGAGTGGCTCGATGGCTCGCTTCCCGGTGACTATGGCTTTGATCCACTCGGACTAGGCAAGGACCCAGCATTCCTCAAGTGGTACAGGGAAGCCGAGCTGATCCACGGGCGATGGGCCATGGCAGCAGTTGTGGGAATCTTCGTCGGCCAAGCCTGGAGCGGCATCCCATGGTTCGAAGCCGGAGCAGCCCCTGGCGCCGTTGCACCGTTCTCTTTCGGGACCCTCCTTGGAACCCAACTCCTGCTCATGGGGTGGGTTGAGAGCAAGAGGTGGGGAAATTCTTCGACCCACTGTCACTCGCTGCATGCAAGGATTGCCATGTTGGCTATGCTAATCTTCTACTTTGAGGCTGGCCAAGGGAAGACACCCCTTGGAGCTCTTGGCTTGTAA 597 58.63 MAATSAAVLNGLGSPFLTGGKRSQSLLSAGVAAKAGAAVPAPRRLIVVAAAPKKSWLPGVKAGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAAPGAVAPFSFGTLLGTQLLLMGWVESKRWGNSSTHCHSLHARIAMLAMLIFYFEAGQGKTPLGALGL* 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14705478 14706883 - Vvi12g867 Vvi12g867 773390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g867 198 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 171 198 - -
Vvi12g867 198 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP24 10A, CHLOROPLASTIC 1 161 - -
Vvi12g867 198 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 171 198 IPR001344 GO:0009765|GO:0016020
Vvi12g867 198 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 161 IPR001344 GO:0009765|GO:0016020
Vvi12g867 198 SUPERFAMILY Chlorophyll a-b binding protein 65 198 - -
Vvi12g867 198 Pfam Chlorophyll A-B binding protein 69 164 IPR022796 -
Vvi12g867 198 Gene3D Chlorophyll a/b binding protein domain 69 169 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g867 K08917 - vvi:100241887 300.441