Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g871 ATGGAGGCAATCTTTCTCTGCTTAATTTCTCTGGTTTTGAGGGTTTCCGGTATTTCTGAAGGTGATGCCTTGTATGCACTAAAGTCAAGTTTAGTCGACCCTAAAGATGTTTTACAAAGTTGGGATACTAGCAGTGGTAATCCTTGCATATGGTTTCACGTTACGTGCAATGGTGATGGTAATGTTATAAGAGTTGATCTTGGAAATGGAAGTTTATCTGGTCAATTGGATTCAAGAGTTGGTCAGCTTACAAAATTAGAATATTTGGGACTTTATAATAATAACATAAGTGGAAAAATACCGGAGGAGCTTGGGAATTTGGAAAACTTGATGAGCTTGGATCTTTACTTCAACAATTTAAGCGGTCCAATTCCGGGCACATTGGGCAAGCTTCGAAAACTACATTTCTTGCGGCTTAACAACAACATCTTGATGGGAACTATTCCTATGTCTTTAACTGCTGTATCATCACTGGAAATCCTGGATCTATCGAACAACAAACTAACAGGAGATATACCAGTCAATGGCTCCTTTTCATTATTTACTCCCATCAGTTTTGGTAATAATCGTCTAAGTAATAATTCTCCAAAAAGAACGCTCGATTCTCCATCTCCGATTTCTCCAAATCCATTGACTCCACCGACTCCTTCAGGAAACAGTGCCATTGGTGTCATTGCTGGATTTATTGCTCTTGGTGTGTTCATTGCCTCTGCAATTGTTTTTGTTTGTTGGCGACTAAGGAGACCACGGGCGCACTTTTTTGATGTACCTGCTGAGGAAGATCCATTAGTTCATTTGGGACAGCTCAGAAGGTTTTCTCTTCATCAACTAAAATATGCAACAAACAATTTTAGCAATAAAGACATACTGGGTAGAGGTGGATTTGGTAAAGTTTACAAAGGACGCTTGGCTGATGGTTCTCTAGTGGCAATAAAAAGATTGAAAGAGGAGCGTACTCATGGTGGGGAACTGCAGTTTCAGACAGAATTAAGAATGATCAGCATGGCAGTGCATAGGAATCTACTTCGTCTGCAAGGCTTTTGCATGACATCGACAGAAAGGTTGCTTGTCTATCCTCTTATGGTTAATGGAAGTGTTGCATCATGTTTAAGAGAGCGGACAGATGGACAATCCCCTCTTGATTGGCCAGCAAGGAAACAAATTGCATTGGGATCTGCAAGGGGGCTTGCTTATTTGCATGATTCTTGTGACCCTAAGGTAATTCATCGTGATGTGAAGGCAGCAAACATACTGTTGGATGAAGAGTTTGAAGCAGTGGTTGCAGATTTTGGGCCGGCTAAACTCATGGACTACAATGATACTCATGTTACCACAGCTGTACATGGAACACTTGGGCATATTGCACCAGAGTACCTCTCCACTGGAAGGTCTTCAGAGAAGACTGATGTTTATGGATATGGGATCATGCTTCTTGAGCTCATCACTGGGCAGAGGGCTTTTGATCTTGCTCGGTTAGCCGGTAATGAGGACGTTATGTTACTCAGTTGGGTTAAGGAACTGTTGAACAACAAGAAGTTGGAAACACTGGTTGATTCCAAGCTGCAGGGCAATTACATTGTGGAGGAGGTAGAGGAGCTAATCCAGGTGGCTCTCCTTTGCACACTAGATGCAGCTTCAGACCGACCCAAGATGTCAGATGTGGTTAAAATGCTTGAAGGTGATGGTTTAGCTGAAAGGTGGGAACAGTGGCAAAAGAAGGATATAATTTGCGGAGAGCAAAATCATAGCAACTTCCCCTCTAATAATTGGATTATAAATGACTCCACTCCAGGCCTTCGTCCTGAAGAATTGTCCGGTCCCAGATGA 1827 42.15 MEAIFLCLISLVLRVSGISEGDALYALKSSLVDPKDVLQSWDTSSGNPCIWFHVTCNGDGNVIRVDLGNGSLSGQLDSRVGQLTKLEYLGLYNNNISGKIPEELGNLENLMSLDLYFNNLSGPIPGTLGKLRKLHFLRLNNNILMGTIPMSLTAVSSLEILDLSNNKLTGDIPVNGSFSLFTPISFGNNRLSNNSPKRTLDSPSPISPNPLTPPTPSGNSAIGVIAGFIALGVFIASAIVFVCWRLRRPRAHFFDVPAEEDPLVHLGQLRRFSLHQLKYATNNFSNKDILGRGGFGKVYKGRLADGSLVAIKRLKEERTHGGELQFQTELRMISMAVHRNLLRLQGFCMTSTERLLVYPLMVNGSVASCLRERTDGQSPLDWPARKQIALGSARGLAYLHDSCDPKVIHRDVKAANILLDEEFEAVVADFGPAKLMDYNDTHVTTAVHGTLGHIAPEYLSTGRSSEKTDVYGYGIMLLELITGQRAFDLARLAGNEDVMLLSWVKELLNNKKLETLVDSKLQGNYIVEEVEELIQVALLCTLDAASDRPKMSDVVKMLEGDGLAERWEQWQKKDIICGEQNHSNFPSNNWIINDSTPGLRPEELSGPR* 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14887373 14898278 - Vvi12g871 Vvi12g871 773394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g871 608 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524
Vvi12g871 608 SMART serkin_6 284 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g871 608 MobiDBLite consensus disorder prediction 192 214 - -
Vvi12g871 608 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 608 - -
Vvi12g871 608 PANTHER BNAA08G11770D PROTEIN 6 608 IPR031048 GO:0004675|GO:0005102|GO:0006468
Vvi12g871 608 Gene3D Ribonuclease Inhibitor 17 199 IPR032675 -
Vvi12g871 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Vvi12g871 608 ProSiteProfiles Leucine-rich repeat profile. 157 179 IPR001611 GO:0005515
Vvi12g871 608 MobiDBLite consensus disorder prediction 588 608 - -
Vvi12g871 608 Pfam Leucine rich repeat N-terminal domain 19 57 IPR013210 -
Vvi12g871 608 SUPERFAMILY L domain-like 19 196 - -
Vvi12g871 608 ProSiteProfiles Protein kinase domain profile. 284 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g871 608 Gene3D Phosphorylase Kinase; domain 1 253 359 - -
Vvi12g871 608 Pfam Protein kinase domain 285 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g871 608 SUPERFAMILY Protein kinase-like (PK-like) 262 559 IPR011009 -
Vvi12g871 608 Gene3D Transferase(Phosphotransferase) domain 1 361 578 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76140 PF00069 Pkinase 9.10E-42 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g871 K13416 - vvi:100243623 1191.02