Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g879 ATGGAGCCGGGGATCTTCGGTTCGGTTTTTGTTTCCTTGATTTTAGTGTTCTCTGCGTTTCTGAGGGTCTCTGGTAATGCCGAAGGTGATGCTTTGAATGCGTTGAAGTCAAATTTAGAAGATCCTAACAATGTTTTGCAAAGTTGGAATGCTACCCTTGTCAATCCTTGCAGATGGTATCATGTTACATGCAACAGTGACAAAAGTGTTACAAGAGTTGACCTTGGAAATGCAAATTTATCCGGTCAACTGGTTCCACAGCTTGGTCAGCTTACAAATTTGCAATCTCTGGAACTTTACAGTAATAACATAAGTGGAAAAATACCAAAGGAGCTTGGGAATTTGACAAACTTGGTGAGCTTGGATCTTTACATGAACAATTTAAGTGGTACAATTCCGGACACATTGGGCAAGCTTACAAAACTACGTTTCCTGCGGCTTAACAACAATTCCTTGACAGGAACTATTCCAATGTCTTTAACTACTGTTATGACACTGCAAGTCCTGGATCTGTCGAACAATCACCTAAGAGGAGATATACCAGTTAACGGCTCATTTTCATTATTTTATTCTATCAGTTTTAACAATAATGACCTAAACCAAATTCCAGTTTTTCCACCTCCACCAATTTCTCCAACACCAACGACTTCTTCGGGTTTGTCATTATTATTTTCTAGAAACTTTATAATTGATGAATGTGAATATAAGAAAATCACTTCAGAGGATGGTGCCACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTTCTGCACTTCTGTTTGCTGCCCTTGGAATAGTACTTGCCTGGTGGCTACGAAGGAAACCACAGGAGCACTTTTCTGATGTACCTGCTGAAAAGGATCCAGAAGTTCATTTGGGGCAGCTTAAAAGGTTTTCCCTGCGTGAACTACAAGTTGCAACGGATAATTTTAGTAACAAAAACATTCTGGGCAGTGGTGGATTTGGTAAAGTTTACAAAGGAAGTTTAGCTGATGGTTCTCTAGTGGCAGTAAAAAGACTGAAAAAGGAGTGTATTCATGGTAGGGAACTGCAATTTCAGACAGAAGTTGAAATGATCAGCATGGCTGTGCACCGGAATCTACTTCGTCTACATGGCTTTTGCATGACACCAACAGAACGGTTGCTTGTCTATCCCTTTATGGTTAATGGAAGTGTTGCATCATGTTTGAGAGAGCGAGCTGATGGACAATCACCTCTTAATTGGCCAATAAGGAAACAAATTGCATTAGGATCAGCAAGGGGGCTTGCTTATTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTGAAGGCTGCAAGCATATTGTTGGACAACGAGTTCGAAGCAGTAGTAGGAGACTTTGGGCTGGCTAAACTGATGGACTACAAGGATACTCATGTTACCACTGCTGTATGTGGCACAATTGGGCATATTGCTCCAGAGTACCTCTCCACTGGGAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGAGTAATGCTTCTTGAGCTTATCACTGGACAGAGGGCTTTTGATCCTGCTCGGCTTGCCAATGATGATGCTGTTATGTTACTTGATTGGTTTTATGGTATCAAAGCTAGAGAAAAAAAAAAGAGTAGAAGGATGGTGAAGACTACTATGACTGGTGCAACTCACAGGGAGGAATATGATGCCTCATCTGGGACTTCACAGCTACAAGTTCCAACAACAAATCCAGGCAGTATAGAGAATCCAACCCTGCAAATTACGATCCATAAATTAAATGGATGTAATTTTCTTAAATGGTCGCAATCGGTGAAGCTGTTCATCAGAGTAAAAGGAAAGTTGGGCTATCTCATAGGTGCCAACAAAGCACCCAAGCCGGAAGATCATGTGTACCAAACCTGGGATTCTGAGAACTCCATGGTAATGGCCTGGTTAATCAACTCCATGGAGACAGCTATTGGGCAAACCTACCTCTTTCTTCCTACCGCCAAGGACCTCTGGGATGAAGTCCAAGAGACTTATTCAGATCTAGGTAATGCTACCCAAATGTTTGAAATTAAGACTAAGTTGAAAGATATTAAACAGGGTAGTCATAGTGTTACACAATACTATAATATCCTTCCAAATGCATGGCAAGAACTTGATTTATTCTCTAATATGGAGTGGAAGTGTGCTGAAGATAATGCCCATTATTGCAAGATTCTCGAAAAAGAAAGGGCATTTGATTTTTTGGCAGGACTCAATAAGGAACTTGATGAGGTTCGAGGCCAAATCTTGGGAAAAGAACCACTACCATCTGTAAGGGAGATCTTCTCTGAGGTGCGACGGGAAAAGAGTAGGCCGAAAGTGACATTGGGAGAACAACAATCTAGCCAATCTGAGACTTCTGCCCTAGTTATTCATGGTGAGGCGGCTTTTCAACCAATTGACCAGCAACTAGGAAAAAAGGGTGATTGTCCTTGGTCTGGTGGAAGAAAAAAAAGTGAAGAAACAAGAAAGCAAATTGAAAGTGGCCAGAAGAGAAGAATTCCAGAGAGGAAGCATGAGCACACTCATCTACAAATTGATAAAAAAGACAATATATATAAAGAAAGAGGTCATAACCCCAGCGAAGAAGTGGTTGCAGATTTTGGGCTGGCTAAACTCATGGACTACAGGGATACTCGTGTTACCACGGCTGTACATGGAACACTTGGGCATATTGCCCCAGAGTACCTCTTCACTGGAAGGTCTTCGGAGAAGACTTATGTTTACAGATATGGGATCATGCTTCTTGAGCTCATCACTGGGCAGAGGGCTTTTGATCTTGCCCGTTTGGCCAGCAATCTTATGTTACTCAGTTGGGTCAAGGAACTGTTGAACAAAAAGAAATTGGAAACACTGGTTGATTCTAAGCTGCAGGGCTATTACATTGTAGAGGAGGTAGAGGAGCTAATCCAGGTGGCTCTCCTTTGCACACTAAACACAGCTTCAGACCGACCCAAGATGTCACATGTGGTCAAAATGCTTGAAGGTGATGGTTTGGCTGAAAGGTGGGAACAGTGGAAAAAGGAGGATATAATTTGCGGAGAGCTAAATCATTGCAACTTCTCCTCTAATAATTGGATTATAAATGACTCCACTCCAGGCCTTCATCCTGAAGAATTGTCCGGTCCCAGATGA 3153 41.96 MEPGIFGSVFVSLILVFSAFLRVSGNAEGDALNALKSNLEDPNNVLQSWNATLVNPCRWYHVTCNSDKSVTRVDLGNANLSGQLVPQLGQLTNLQSLELYSNNISGKIPKELGNLTNLVSLDLYMNNLSGTIPDTLGKLTKLRFLRLNNNSLTGTIPMSLTTVMTLQVLDLSNNHLRGDIPVNGSFSLFYSISFNNNDLNQIPVFPPPPISPTPTTSSGLSLLFSRNFIIDECEYKKITSEDGATGAIAGGVAAGSALLFAALGIVLAWWLRRKPQEHFSDVPAEKDPEVHLGQLKRFSLRELQVATDNFSNKNILGSGGFGKVYKGSLADGSLVAVKRLKKECIHGRELQFQTEVEMISMAVHRNLLRLHGFCMTPTERLLVYPFMVNGSVASCLRERADGQSPLNWPIRKQIALGSARGLAYLHDHCDPKIIHRDVKAASILLDNEFEAVVGDFGLAKLMDYKDTHVTTAVCGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDPARLANDDAVMLLDWFYGIKAREKKKSRRMVKTTMTGATHREEYDASSGTSQLQVPTTNPGSIENPTLQITIHKLNGCNFLKWSQSVKLFIRVKGKLGYLIGANKAPKPEDHVYQTWDSENSMVMAWLINSMETAIGQTYLFLPTAKDLWDEVQETYSDLGNATQMFEIKTKLKDIKQGSHSVTQYYNILPNAWQELDLFSNMEWKCAEDNAHYCKILEKERAFDFLAGLNKELDEVRGQILGKEPLPSVREIFSEVRREKSRPKVTLGEQQSSQSETSALVIHGEAAFQPIDQQLGKKGDCPWSGGRKKSEETRKQIESGQKRRIPERKHEHTHLQIDKKDNIYKERGHNPSEEVVADFGLAKLMDYRDTRVTTAVHGTLGHIAPEYLFTGRSSEKTYVYRYGIMLLELITGQRAFDLARLASNLMLLSWVKELLNKKKLETLVDSKLQGYYIVEEVEELIQVALLCTLNTASDRPKMSHVVKMLEGDGLAERWEQWKKEDIICGELNHCNFSSNNWIINDSTPGLHPEELSGPR* 1051
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15218192 15254459 - Vvi12g879 Vvi12g879 773402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g879 1050 ProSiteProfiles Protein kinase domain profile. 310 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g879 1050 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 828 1050 - -
Vvi12g879 1050 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 544 - -
Vvi12g879 1050 MobiDBLite consensus disorder prediction 812 850 - -
Vvi12g879 1050 ProSiteProfiles Protein kinase domain profile. 684 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g879 1050 Gene3D Transferase(Phosphotransferase) domain 1 847 1020 - -
Vvi12g879 1050 Gene3D Transferase(Phosphotransferase) domain 1 387 589 - -
Vvi12g879 1050 Pfam Protein kinase domain 311 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g879 1050 Pfam Protein kinase domain 870 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g879 1050 SUPERFAMILY Protein kinase-like (PK-like) 289 518 IPR011009 -
Vvi12g879 1050 Pfam gag-polypeptide of LTR copia-type 578 622 IPR029472 -
Vvi12g879 1050 Gene3D Phosphorylase Kinase; domain 1 279 386 - -
Vvi12g879 1050 SUPERFAMILY Protein kinase-like (PK-like) 868 1003 IPR011009 -
Vvi12g879 1050 PANTHER - 7 544 - -
Vvi12g879 1050 PANTHER - 828 1050 - -
Vvi12g879 1050 MobiDBLite consensus disorder prediction 817 850 - -
Vvi12g879 1050 SUPERFAMILY L domain-like 28 227 - -
Vvi12g879 1050 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Vvi12g879 1050 Gene3D Ribonuclease Inhibitor 25 204 IPR032675 -
Vvi12g879 1050 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76142 PF00069 Pkinase 1.00E-40 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g879 K13416 - vvi:100266543 942.954