Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g893 ATGGACCTATCACTGCATCTGATTATCAAAAATCACATTCTTGCTTCTTTTTTATTCCACTTTTCGGGGTGTGAGAATCTCAAGAAGCCTTTTAGCCCTCCTCAGGAGGCTCATGTACAAGCGACCCACTCCATGCCAACCCAAAAGATTGAGATCCTCAAATCCATGGAGAATTGGGTTGAGCATAACATTTTGGTTCACCTGAATCTAGATGAAACAGGTGCAAGCCTCACCTCTTGGGCAATTTGGATAAGGGCATGGACTGTAGAAGAGAATAGGCATGGTGACCTTCTCAACAAGTACCTATATCCATCTGGACGAGTAGACATGAGACACATTGAGAAGACAATTCAATATTCTATTGGATTAGGAATGGGCCCATGGATAGAGAATAATCCTTACCTCGGGTTCATCTACACTTCATTTAGAGAAAGGGCGACATTCATCTCCCATGACAACATTGCGAGGCTTGCCAAGGAGCATGGGGATATAAACTCTTTAAGATTGATCCTGATGGACCTATATTGGCTTTTGCTGCACAAGCAGAAGCTGCTGAAGCCGAAGCTGGATCGGCGCAACGCCATCAAGAACATTGACTACGACGCCTCCACCTCCGACGATGCCACCACTCTACGCACCCGCTCTCTCGACCTCTCTCCTATCTCCTCCCGCACCAGCTTCCGAATCCAAGGCAGCGCCGCCGAGTTCGACCAAATCTGCCGCAGCCTCGGCCTCTCCGGCCCGGAGGATTTTGCCATTCCAGCCGCCGCTTGGGAGGCCAGGAAGGCCCTGTCATCGCCTAATCTCCTTCCCAGGTCTCGCTCTGATCCTCCGGAGAAGCAGCCGGTGGCGGAGGAGGTGAGCAGAGAGTTTGGAACTAGGGTTAGGGTTAGGTTCGCTGATAAAATTGAGGATGGAAATGAAAATGAAAGGGATAGTGAGAATGAATTGAATTGTGTTGATTTAAATTCAGTTAGAAGTGGCGGAGGCGGAATCAAGGGGGTCCGGCCGCCTCCGGTTCTTGCGCCTCCGCCAGTGATGAGGCGGCCGGTGGTGGATAATGTGAGCTCAACTTGGGATTTGTTGAAGTCCTTTGCTCCTCAAGGTGATGAACCTTTGGATTCGCTGCGTGGTGGTTCCAAAGTTGCTAGCTCTTCGGACGAAGAGGATGTGGTAATTGAGAGAAATAACGTTAATGGAGGGAATGCTGGGATAGGAGAATCTCAAGAGTCTTGTTCTTCCACGTCAAACGATGAGGATGAGGATTCTAGCATGACTTTGGAGCCAATCTATGGGATTTCGCCAAATGGCCAATTCAAGCGCACCATCAATTCCTGGCAGAGGGGTGAGCTTCTAGGAAGTGGATCTTTTGGAACAGTGTATGAAGGCTATACTGATGATGGATTCTTTTTTGCTGTGAAGGAGGTTTCATTGCTTGATCAAGGGAGCCAGGGCAAACAAAGCATTTATCAACTTGAACAGGAGATTTCTCTTTTAAGTCAGTTTGAACATGAGAACATAGTTCGGTATTATGGCACAGACAAGGATGACTCTAAACTTTATATCTTCCTTGAGCTTGTGACGAAAGGTTCACTTTTAAGTCTTTATCAAAAGTATGATTTGCGGGAAAGCCAAGCCTCGGCCTACACAAGGCAGATTTTAAATGGTTTGAAATATCTACATGAGCAAAATGTAGTTCACAGGGATATCAAATGTGCTAATATATTGGTGGATGTAAATGGCTCTGTGAAACTTGCGGATTTTGGATTGGCAAAGGCAACCAAATTGAATGATGTAAAATCTTGTAAAGGGACAGTATTCTGGATGGCCCCAGAGGTCGTTAACCGGAAGAATAAGGGCTATGGGCTTGCAGCTGATATATGGAGCCTTGGATGCACTGTGTTAGAGATATTGACTCGTCGACCCCCATATTCCCACTTGGAAGGCATGCAAGCGTTATTTAGGATTGGCAAGGGTGAACCTCCTCCTGTTTCTAATTCCTTGTCATCAGATGCCCGAAATTTTATCCTCAAATGCTTGCAAGTCAACCCTAGTGATCGGCCTACTGCTGGTCAGTTACTGGACCATCCATTTGTGAAAAGGCCACTGCACACTTTCTCTGGCCCTCAATCTCCTCGTATGAATGGAATACGACCTTAA 2160 46.76 MDLSLHLIIKNHILASFLFHFSGCENLKKPFSPPQEAHVQATHSMPTQKIEILKSMENWVEHNILVHLNLDETGASLTSWAIWIRAWTVEENRHGDLLNKYLYPSGRVDMRHIEKTIQYSIGLGMGPWIENNPYLGFIYTSFRERATFISHDNIARLAKEHGDINSLRLILMDLYWLLLHKQKLLKPKLDRRNAIKNIDYDASTSDDATTLRTRSLDLSPISSRTSFRIQGSAAEFDQICRSLGLSGPEDFAIPAAAWEARKALSSPNLLPRSRSDPPEKQPVAEEVSREFGTRVRVRFADKIEDGNENERDSENELNCVDLNSVRSGGGGIKGVRPPPVLAPPPVMRRPVVDNVSSTWDLLKSFAPQGDEPLDSLRGGSKVASSSDEEDVVIERNNVNGGNAGIGESQESCSSTSNDEDEDSSMTLEPIYGISPNGQFKRTINSWQRGELLGSGSFGTVYEGYTDDGFFFAVKEVSLLDQGSQGKQSIYQLEQEISLLSQFEHENIVRYYGTDKDDSKLYIFLELVTKGSLLSLYQKYDLRESQASAYTRQILNGLKYLHEQNVVHRDIKCANILVDVNGSVKLADFGLAKATKLNDVKSCKGTVFWMAPEVVNRKNKGYGLAADIWSLGCTVLEILTRRPPYSHLEGMQALFRIGKGEPPPVSNSLSSDARNFILKCLQVNPSDRPTAGQLLDHPFVKRPLHTFSGPQSPRMNGIRP* 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15655686 15716372 + Vvi12g893 Vvi12g893 773416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g893 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 565 577 IPR008271 GO:0004672|GO:0006468
Vvi12g893 719 ProSiteProfiles Protein kinase domain profile. 446 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g893 719 SUPERFAMILY Ferritin-like 35 163 IPR009078 -
Vvi12g893 719 Pfam Fatty acid desaturase 71 165 IPR005067 GO:0006631|GO:0045300
Vvi12g893 719 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 300 702 - -
Vvi12g893 719 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 180 308 - -
Vvi12g893 719 MobiDBLite consensus disorder prediction 267 288 - -
Vvi12g893 719 Gene3D Transferase(Phosphotransferase) domain 1 443 712 - -
Vvi12g893 719 Gene3D Ribonucleotide Reductase, subunit A 31 69 IPR012348 GO:0016491
Vvi12g893 719 Gene3D Ribonucleotide Reductase, subunit A 70 171 IPR012348 GO:0016491
Vvi12g893 719 MobiDBLite consensus disorder prediction 366 433 - -
Vvi12g893 719 SUPERFAMILY Protein kinase-like (PK-like) 420 709 IPR011009 -
Vvi12g893 719 Pfam Protein kinase domain 447 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g893 719 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 180 308 - -
Vvi12g893 719 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 300 702 - -
Vvi12g893 719 SMART serkin_6 446 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g893 719 ProSitePatterns Protein kinases ATP-binding region signature. 452 474 IPR017441 GO:0005524
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76143 PF00069 Pkinase 2.40E-69 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g893 K13414 - vvi:100241228 952.97