Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g911 ATGGCTTTCTTCAACCCATGGGATGACTCTAAAGTTTATATCTTCCTTGAGCTTGTGACAAAAGGTTCACTTTTAAGTCTTTATCAAAAGTATCATTTGCGAGAAAGCCAAGCCTCGGCCTACATAAGGCAGATTTTAAATGGTTTGAAATATCTACATGAGCAAAATGTAGTTCACAGGGATATCAAATGTGCTAATATATTGGTGGATGTAAATGGATCTATGAAAATTGCAGATTTTGGATTGGCAAAGGCACCCAAATTTAATGTTGTAAAATCTTGTAAAGGGACACCATTCTGGATGGAGCCAGAGGTTGTTAATTTGAAAAATGAGGGCTATGGGCTTGCAACTGATATATGGAGCCTTGGATGCACTGTGTTAGAGATATTGACTCGTCAATACCCATATTACCCCTTGGAATATGTACGTATGACATTTTGTAGATATATAACATTATTTTCTTTAATGTTTTTTCTTGTTTTGTTCTTCTGTTTGTGCTCTTCAATTACTTGTTATTCAAATTGA 525 35.05 MAFFNPWDDSKVYIFLELVTKGSLLSLYQKYHLRESQASAYIRQILNGLKYLHEQNVVHRDIKCANILVDVNGSMKIADFGLAKAPKFNVVKSCKGTPFWMEPEVVNLKNEGYGLATDIWSLGCTVLEILTRQYPYYPLEYVRMTFCRYITLFSLMFFLVLFFCLCSSITCYSN* 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16381442 16399280 + Vvi12g911 Vvi12g911 773434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g911 174 ProSiteProfiles Protein kinase domain profile. 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g911 174 ProSitePatterns Serine/Threonine protein kinases active-site signature. 57 69 IPR008271 GO:0004672|GO:0006468
Vvi12g911 174 SUPERFAMILY Protein kinase-like (PK-like) 8 150 IPR011009 -
Vvi12g911 174 Gene3D Transferase(Phosphotransferase) domain 1 2 154 - -
Vvi12g911 174 PRINTS Tyrosine kinase catalytic domain signature 16 29 IPR001245 GO:0004672|GO:0006468
Vvi12g911 174 PRINTS Tyrosine kinase catalytic domain signature 51 69 IPR001245 GO:0004672|GO:0006468
Vvi12g911 174 PRINTS Tyrosine kinase catalytic domain signature 117 139 IPR001245 GO:0004672|GO:0006468
Vvi12g911 174 Pfam Protein kinase domain 8 137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g911 174 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 8 146 - -
Vvi12g911 174 SMART serkin_6 1 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g911 174 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 8 146 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76145 PF00069 Pkinase 2.50E-40 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g911 - K13414 vvi:109123488 265.774