Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g917 ATGTTGACTATCATTGGCGTGTTCATGTTTTTCCCCTCTCTCACACAAGTATTTTTATTTTTTTTATTTTGCAGTGATGGATTCTTTTTTGCTGTGAAGGAGGTTTCATTGCTTGATCAAGGGGGCAAGGGCAAACAAAGCATTTATCAACTTGAACAGGAGATTTCTCTTTTAAGTCAGTTGGAACATGAGAACATAGTTCGGTATTATGGCACAAATAAGGATGACTCTAAACTTTATATCTTCCTTGAGCTTGTGACGAAAGGTTCACTTTTAAGCCTTTATCAAAAGTATCATTTGCAGGAAAGCCAAGCCTCGGTCTACACAAAGCAGATTTTAAATGGTTTGAAATATCTACATGAGCAAAATGTAGTTCACAGGGATATCAAATGTGCAAATATATTGGTGGATGTACATGGATCTGTGAAAATTGCGGATTTTGGATTGGCAAAGGCAACCAAATTGAATGATGTAAAATCTTGTAGAGGAACACCATTCTGGATGGCCCCAGAGGTTGTTAATTGGAAAAATGAGGGCTATGGGCTTGCAACTGATATATGGAGCCTTGGATGCACTGTGTTGGAGATGTTAACTCGTCGACCCCCATATTCCCACTTGGAAGGCGTTGGGTTGTTAGATTTGGGATATATAAAAAAAAAGGTTCAATCTGAAGCCATTTATTTTTGGATAATTGGCACTTATGAATTATACTTTTCCTTGTTTGGAGAATGCCACTCAATATCTGTCTTGTCCTGGATGTCATGTATGAATACCATGGAATTATCAATATTTTCTTTTATGTTATCAAACACTCCAATTGACAAACTAATATTCTCTCTTTCATTTTCAAGGGATATCAAATGTGCTAATATATTGGTGGGTGTAAATAAATCTGTGAAAATTGCGGATTTTGGATTGGCAAAGGCAACCAAATTGAATGATGTAAAATCTTTTAAAGGGACACTACGCTGGATGGCCCCAGAGGTATTTAATCAGAAAAATGAGGGCTATGGGCTTGCAGTTAATATATGGAGCCTTGGATGCACTGTGTTAGAGATGTTGACTTGTCGACCCCCATATTCCAACATGGAAGACGGGCAAGTGATATCAAAAATTTACAGGAGTGAACCTCCCGATGTTCCTGATTCCTTCTCATCAGATGCCCGAGATTTTATCCTCAAATGCTTGCAAGTCAACCCTAGTGATCGGCCTACTGCTGGTGAGTTGCTGGACCATCCATTTGTGAAGAGGCCATCTGGCCCTCAATCTCCTCGTACGAGTGGAATACAACCTTAA 1296 38.97 MLTIIGVFMFFPSLTQVFLFFLFCSDGFFFAVKEVSLLDQGGKGKQSIYQLEQEISLLSQLEHENIVRYYGTNKDDSKLYIFLELVTKGSLLSLYQKYHLQESQASVYTKQILNGLKYLHEQNVVHRDIKCANILVDVHGSVKIADFGLAKATKLNDVKSCRGTPFWMAPEVVNWKNEGYGLATDIWSLGCTVLEMLTRRPPYSHLEGVGLLDLGYIKKKVQSEAIYFWIIGTYELYFSLFGECHSISVLSWMSCMNTMELSIFSFMLSNTPIDKLIFSLSFSRDIKCANILVGVNKSVKIADFGLAKATKLNDVKSFKGTLRWMAPEVFNQKNEGYGLAVNIWSLGCTVLEMLTCRPPYSNMEDGQVISKIYRSEPPDVPDSFSSDARDFILKCLQVNPSDRPTAGELLDHPFVKRPSGPQSPRTSGIQP* 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16524279 16552240 + Vvi12g917 Vvi12g917 773440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g917 431 SMART serkin_6 20 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g917 431 Gene3D Transferase(Phosphotransferase) domain 1 282 418 - -
Vvi12g917 431 Pfam Protein kinase domain 284 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g917 431 Pfam Protein kinase domain 28 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g917 431 PANTHER BNAA02G34600D PROTEIN 283 419 - -
Vvi12g917 431 PANTHER BNAA02G34600D PROTEIN 22 210 - -
Vvi12g917 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vvi12g917 431 ProSiteProfiles Protein kinase domain profile. 1 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g917 431 SUPERFAMILY Protein kinase-like (PK-like) 23 212 IPR011009 -
Vvi12g917 431 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 22 210 - -
Vvi12g917 431 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 283 419 - -
Vvi12g917 431 SUPERFAMILY Protein kinase-like (PK-like) 284 419 IPR011009 -
Vvi12g917 431 MobiDBLite consensus disorder prediction 400 431 - -
Vvi12g917 431 Gene3D Transferase(Phosphotransferase) domain 1 16 227 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76146 PF00069 Pkinase 1.00E-54 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g917 - K13414 vvi:100241228 333.569