Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g92 ATGAGGCTCTCTTCATCGGGTTTTGCTCATCAAACAGAAGAAGGGGAAAAGAAATGCTTGAATTCGGAGCTATGGCATGCATGTGCAGGCCCTCTTGTATCTCTGCCTGCTGTTGGAAGTCGTGTGGTGTACTTCCCCCAGGGTCACAGTGAACAGGTTGCTGCCTCAACCAACAAGGAAGTAGATGCTCATATCCCTAACTACCCTAGTTTGGCCCCTCAACTTATTTGTCAGCTTCATAATGTGACCATGCATGCAGATGTTGAGACAGATGAAGTATATGCTCAGATGACCTTGCAACCATTGAGTCCGCAAGAGCAAAAAGAAGTGTGCCTGCTACCAGCAGAATTGGGTTCCCCCAGCAAACAGCCAACCAACTATTTCTGCAAAACATTGACTGCAAGTGACACCAGTACTCATGGAGGATTCTCTGTTCCTCGCCGGGCTGCTGAAAAAGTGTTTCCTCCTCTTGATTACACCCAGCAGCCTCCTGCTCAAGAATTGATTGCAAGGGATCTTCATGGTAATGAATGGAAATTCAGACATATATTTCGTGGCCAGCCCAAGAGGCATCTTCTTACAACAGGATGGAGTGTGTTTGTAAGTGCAAAAAGACTTATTGCCGGCGATTCTGTCCTTTTTATCTGGAACGAAAAGAATCAATTACTCCTGGGTATTCGGCGAGCTAATCGTCCACAAACCATAATGCCTTCATCAGTTTTATCAAGTGATAGCATGCATATTGGCCTTCTTGCTGCAGCTGCCCATGCAGCTGCCACAAATAGCCGCTTTACTATATTTTACAATCCAAGGGCTAGTCCATCAGAATTCGTCATACCTTTGGCAAAGTATGCCAAAGCAGTCTATCATACCCGTGTTTCTGTTGGTATGCGTTTCAGGATGCTGTTTGAGACGGAAGAGTCGAGTGTCCGTCGGTACATGGGCACAATAACTGGCATTAGTGATTTAGATCCTGTTCGCTGGCCAAACTCACATTGGCGCTCTGTAAAGGTTGGTTGGGATGAATCCACTGCCGGGGAGAGGCAACCCAGAGTTTCCTTGTGGGAGATTGAGCCTTTAACAACATTCCCAATGTATCCATCCCCTTTCCCACTTAGACTGAAGCGACCATGGCCCTCTGCCCTACCTTCCTTCCACGCTCACAAAGATGGTGATATGAGCATAAATTCTCCACTCATGTGGCTCCGAGGAGACATTGGAGATCAGGGGATTCAGTCTTTAAATTTTCAGGGTTATGGACTTACACCCTGGATGCAACCAAGGCTTGATGCATCAATGCTTGGTTTACAATCTAACATGCAACAAGCTATAGCAGCTGCTTCGCTTCAGGAATTGAGAGCACTGGATCCTTCCAAACATCCTGCTCAGTCCCTTTTGCAGTTCCAGCAACCACAAAATGTTTCCAATAGTCCTGCTTCTGTCTTCCGGGGGCAGATCTTCTGCAACAACAGTTGCAGGTTGTCTGATCAGCAACATATCCCAAAGGTCATATCTGCTCTATCTCAGCTTTCATCACCCACTCAATCTCTGCCTCCTTCCTTACAGACTATCCCTTCACCAATACAGCAGCAGATTTTTCCTGATTCTGTTGGGAACCCAATTACTACATCAGATGTTTCTACCATGCAGAGTCTTTTAGGTTCATTCTCCCAAGATGGAACATCCCATCTACTTAACTTGCATGGATCAAATCCTGTAATTTCTTCTTCTGCCTTCTTTCCCAAGCAAGTTGCGGTTGAACCTCCGCTTCCCTCTGGAACTACTCAATGTGTACTGCCCCAGGTGGAAGAGTTGGCAACACCGCCTTCAAATGCCTCTGAACTCTCCACCTTGTTGCCACCTTTTCCTGGTAGAGATGAGAATGATTCAGTGTCTATGCCATTTTCTACGCCTAATTTTGCAAATGCTCCAGGCACCGATTTTCCACTTAATTCAGACATGACAACTTCAAGTTGCATAGATGAATCAGGTTTCTTGCAGTCTTCTGAAAATTTGGAGCAAGTAAACCCACCAACCAGAACCTTTGTTAAGGTTCACAAGTTAGGGTCCTTTGGGAGGTCACTGGATATCACCAAATTCAGCAGCTATGATGAGCTGCGTGGTGAGCTTGGCCGAATGTTTGGCCTTGAAGGCCGGTTGGAGGACCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGAGAGAATGATGTTCTTCTCCTTGGTGATGACCCTTGGCAGGAGTTTGTCAATAATGTGTGGTATATCAAGATACTATCTCCGCTTGAAGTCCAGCAGATGGGCAAAGAAGGCATCAATGTCCCGAATCCCATCCCAAGCCACAGGATTTCCAATAGTGGCAACAGCTGGTTGGGTCAGGTGGCAAGGGTGGCAAAGGTGGAAGGAGGACAAATGATCTTTAGGTTCCAGGCTGTTCCAACTTTATGTGACCTTGTTGCAGCAAAATCTTTTCACCTTTCCATAAGAAATCCTACTTGTTCAAAGTAA 2511 46.2 MRLSSSGFAHQTEEGEKKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLAPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKEVCLLPAELGSPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYAKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSALPSFHAHKDGDMSINSPLMWLRGDIGDQGIQSLNFQGYGLTPWMQPRLDASMLGLQSNMQQAIAAASLQELRALDPSKHPAQSLLQFQQPQNVSNSPASVFRGQIFCNNSCRLSDQQHIPKVISALSQLSSPTQSLPPSLQTIPSPIQQQIFPDSVGNPITTSDVSTMQSLLGSFSQDGTSHLLNLHGSNPVISSSAFFPKQVAVEPPLPSGTTQCVLPQVEELATPPSNASELSTLLPPFPGRDENDSVSMPFSTPNFANAPGTDFPLNSDMTTSSCIDESGFLQSSENLEQVNPPTRTFVKVHKLGSFGRSLDITKFSSYDELRGELGRMFGLEGRLEDPLRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGKEGINVPNPIPSHRISNSGNSWLGQVARVAKVEGGQMIFRFQAVPTLCDLVAAKSFHLSIRNPTCSK* 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1745862 1766246 - Vvi12g92 Vvi12g92 772615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g92 836 SMART B3_2 128 230 IPR003340 GO:0003677
Vvi12g92 836 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Vvi12g92 836 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 486 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi12g92 836 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 492 613 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi12g92 836 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 626 792 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi12g92 836 Gene3D - 677 769 - -
Vvi12g92 836 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Vvi12g92 836 Pfam AUX/IAA family 675 762 IPR033389 -
Vvi12g92 836 CDD B3_DNA 127 228 IPR003340 GO:0003677
Vvi12g92 836 ProSiteProfiles PB1 domain profile. 680 764 IPR000270 GO:0005515
Vvi12g92 836 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi12g92 836 PANTHER AUXIN RESPONSE FACTOR 6 1 486 - -
Vvi12g92 836 PANTHER AUXIN RESPONSE FACTOR 6 626 792 - -
Vvi12g92 836 PANTHER AUXIN RESPONSE FACTOR 6 492 613 - -
Vvi12g92 836 Gene3D - 292 364 - -
Vvi12g92 836 SUPERFAMILY CAD & PB1 domains 671 754 - -
Vvi12g92 836 SUPERFAMILY DNA-binding pseudobarrel domain 114 257 IPR015300 -
Vvi12g92 836 Gene3D - 126 229 IPR015300 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13841 PF02309 AUX_IAA 1.70E-05 CL0072 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g92 - - zju:107416662 1280.39