Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12randomg20 ATGCTTTTGGCTGCATTCAATAATTTCAATGGCGGGTTCCTTTCTAGAGAAGTAGAGATCCATTCCAATCTCTTTAATTATTTGCCTTTCTTTCAATTTGGCCATGGAAAAATTATCCAAAATATTTATAATTATTTTGTAGAGCAGTCTATGAACCATTCATCAACATTATTAGATTGTAAATTCCCATCTTGGTCTTCCATAGGAAACTTGTCTAGCTTAACCTTTTTGTTCCTTAATCACAACGAGCTTAGTGGTGCCATTCCTCTTGAAATGAATAATATCACTCATTTGAAATCTTTACAGTTATCTGAGAACAACTTCATTGGCCAACTACCACAAGAGATATGCCTTGGTAGTGTTCTTGAAAACTTTACGGCTATGGGAAACCATTTCACTGGTCCTATTCCAAAAAGCTTGAAAAATTGCACTAGTTTATTCAGAGTTAGGCTTGAAAGAAACCAACTGACGGGAGACATAGCCGAAAGTTTTGGTGTGTACCCGACCCTAAATTATATTGATCTAAGCAGCAACAATTTTTATGGTGAGCTTTCTGAGAAATGGGGGCAGTGCCACATGCTCACAAGCCTGAACATCTCCAACAACAATATTTCTGGTGCTATACCGCCTCAACTTGGGAAAGCAATTCAACTGCAACAACTTGATCTCTCCGCCAATCATCTAAGTGGGAAGATCCCAAAAGAGTTGGGAATGTTGCCATTATTGTTCAAATTGTTGTTAGGAGACAACAATCTTTCAAGCAGTATTCCTTTGGAATTGGGAAACTTATCCAATCTTGAAATTCTTAACTTGGCATCAAACAACTTAAGCGGTCCAATTCCCAAACAGCTGGGAAACTTCTTGAAATTACAGTTCTTCAACTTGAGCGAGAATAGATTTGTGGATAGCATTCCTGACGAAATTGGAAAGATGCAAAATCTTGAAAGTCTCGATCTTAGTCAAAATATGTTGACAGGAGAGGTTCCACCGCTGCTTGGAGAATTAAAGAACCTGGAAACGTTGAATCTCTCCCATAACGGGCTCTCTGGCACCATCCCACACACTTTTGATGATCTGATAAGCCTGACAGTTGTTGATATATCCTACAATCACACTCTATTGCTCTTATTTTCTTTTATTATTGGCATTTATTTTCTTTTCCAAAAATTGAGGAAGAGAAAAACCAAGTCTCCAGAAGCAGATGTTGAAGATCTATTTGCAATATGGGGCCATGATGGAGAATTGTTGTATGAGCACATCATACAGGGGACCGATAATTTCAGTTCGAAACAGTGTATCGGCACTGGAGGATATGGTACTGTTTACAAGGCTGAGTTGCCAACAGGCCGGGTTGTTGCTGTGAAAAAACTTCACTCATCACAAGATGGAGATATGGCTGATTTGAAAGCTTTCAAAAGCGAGATTCATGCTTTAACACAGATAAGGCATCGCAACATCGTCAAGCTTTATGGCTTCAGTTCATTTGCAGAGATCTCATTTTTGGTTTATGAGTTTATGGAAAAGGGGAGCTTGCGAAACATTCTAAGCAACGACGAAGAAGCAGAAAAATTAGATTGGAATGTGAGGCTAAACATTGTTAAAGGCGTGGCTAAAGCTTTATCTTACATGCACCATGATTGCTCACCTCCTATAGTTCATCGAGACATATCGAGCAACAATGTTTTGTTAGATTCAGAATATGAGGCTCATGTATCTGACTTTGGCACGGCTAGGCTTTTAAAGTTGGACTCATCTAATTGGACTTCATTTGCAGGAACTTTTGGTTATACTGCTCCAGAACTTGCTTACACGATGAAGGTTGATAATAAAACTGATGTTTATAGCTTCGGAGTGGTAACATTGGAAGTAATTATGGGAAAGCATCCTGGAGAACTCATCTCGTCCCTGTTATGGTCAGCGTCCTCATCATCCTCATCACCATCAACTGTGGACCATCGCCTATTGAATGATGTGATGGACCAGCGCCCCTCACCTCCTGTGAATCAATTGGCCGAGGAAATAGTGGCTGTAGTGAAGTTAGCATTTGCATGCTTGCGTGTTAATCCCCAATCTCGGCCGACTATGCAACAAGTTGGTCGAGCACTCTCAACACAGTGGCCACCATTGTCAAAACCGTTTTCCATGATAACGTTGGGTGAGCTGCTGGGTCATGATAGCTGA 2181 40.26 MLLAAFNNFNGGFLSREVEIHSNLFNYLPFFQFGHGKIIQNIYNYFVEQSMNHSSTLLDCKFPSWSSIGNLSSLTFLFLNHNELSGAIPLEMNNITHLKSLQLSENNFIGQLPQEICLGSVLENFTAMGNHFTGPIPKSLKNCTSLFRVRLERNQLTGDIAESFGVYPTLNYIDLSSNNFYGELSEKWGQCHMLTSLNISNNNISGAIPPQLGKAIQLQQLDLSANHLSGKIPKELGMLPLLFKLLLGDNNLSSSIPLELGNLSNLEILNLASNNLSGPIPKQLGNFLKLQFFNLSENRFVDSIPDEIGKMQNLESLDLSQNMLTGEVPPLLGELKNLETLNLSHNGLSGTIPHTFDDLISLTVVDISYNHTLLLLFSFIIGIYFLFQKLRKRKTKSPEADVEDLFAIWGHDGELLYEHIIQGTDNFSSKQCIGTGGYGTVYKAELPTGRVVAVKKLHSSQDGDMADLKAFKSEIHALTQIRHRNIVKLYGFSSFAEISFLVYEFMEKGSLRNILSNDEEAEKLDWNVRLNIVKGVAKALSYMHHDCSPPIVHRDISSNNVLLDSEYEAHVSDFGTARLLKLDSSNWTSFAGTFGYTAPELAYTMKVDNKTDVYSFGVVTLEVIMGKHPGELISSLLWSASSSSSSPSTVDHRLLNDVMDQRPSPPVNQLAEEIVAVVKLAFACLRVNPQSRPTMQQVGRALSTQWPPLSKPFSMITLGELLGHDS* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12randomg20 726 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 372 722 - -
Vvi12randomg20 726 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 58 371 - -
Vvi12randomg20 726 Pfam Leucine Rich repeat 190 206 IPR001611 GO:0005515
Vvi12randomg20 726 SMART LRR_typ_2 71 94 IPR003591 -
Vvi12randomg20 726 SMART LRR_typ_2 311 333 IPR003591 -
Vvi12randomg20 726 SMART LRR_typ_2 263 287 IPR003591 -
Vvi12randomg20 726 SMART LRR_typ_2 335 358 IPR003591 -
Vvi12randomg20 726 SMART LRR_typ_2 95 119 IPR003591 -
Vvi12randomg20 726 Gene3D Transferase(Phosphotransferase) domain 1 506 707 - -
Vvi12randomg20 726 PRINTS Leucine-rich repeat signature 314 327 - -
Vvi12randomg20 726 PRINTS Leucine-rich repeat signature 335 348 - -
Vvi12randomg20 726 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 58 371 - -
Vvi12randomg20 726 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 372 722 - -
Vvi12randomg20 726 ProSitePatterns Protein kinases ATP-binding region signature. 433 456 IPR017441 GO:0005524
Vvi12randomg20 726 ProSitePatterns Tyrosine protein kinases specific active-site signature. 551 563 IPR008266 GO:0004672|GO:0006468
Vvi12randomg20 726 Gene3D Ribonuclease Inhibitor 304 375 IPR032675 -
Vvi12randomg20 726 Pfam Leucine Rich repeats (2 copies) 312 352 IPR025875 -
Vvi12randomg20 726 Gene3D Ribonuclease Inhibitor 2 303 IPR032675 -
Vvi12randomg20 726 SUPERFAMILY RNI-like 65 372 - -
Vvi12randomg20 726 ProSiteProfiles Protein kinase domain profile. 427 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12randomg20 726 Gene3D Phosphorylase Kinase; domain 1 389 505 - -
Vvi12randomg20 726 SUPERFAMILY Protein kinase-like (PK-like) 413 702 IPR011009 -
Vvi12randomg20 726 Pfam Protein kinase domain 428 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12randomg20 726 ProSiteProfiles Leucine-rich repeat profile. 313 335 IPR001611 GO:0005515
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76150 PF00069 Pkinase 2.70E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12randomg20 - - vri:117925968 1148.27