Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1005 ATGGCATCTGGGAATACATATTTTGATGACATGCGGAGCAAATCTGAGGTTATTGATCCTCCTCAAAGTGAAGATATGATGGAAGTCAGTGAACATGTGAATGATCCAGCTCAAACTACTCTGAAACCTAACGTGACCGTCTCTAGTAGTGTGCGGGAGCTATTAGAGTGTCCTGTGTGCTTAAATGCTATGTACCCTCCCATCCATCAGTGTTCAAATGGTCACACATTGTGTTCTGGATGCAAACCTAGGGTGCATAACCGATGTCCCACTTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCCTTGGAGAAGGTAGCTGCGTCCCTTGAACTTCCATGTAAATATCAGAGTTTTGGGTGCTTGGGCATATATCCTTATTACAGCAAGCTAAAGCATGAATCTCAGTGTGTCTATAGACCCTATAACTGCCCCTATGCTGGATCAGAATGCACAGTCATTGGTGACATTCCTTATCTGGTGGCCCACCTAAAAGATGATCATAAAGTTGACATGCACAATGGCAGTACTTTCAACCATCGCTATGTTAAATCAAATCCTCATGAGGTTGAAAATGCTACTTGGATGCTAACGGTTTTCAGTTGCTTTGGTCAGTACTTCTGTCTGCATTTTGAAGCCTTCCAGCTTGGAATGGCGCCAGTCTATATAGCATTCTTGAGGTTCATGGGTGATGACAATGAGGCAAAGAACTACAGTTACAGTCTAGAGGTGGGAGGGACTGGCAGGAAGATGATTTGGCAAGGGGTGCCCAGAAGCATAAGGGACAGCCACAGAAAGGTTCGTGACAGTTTTGATGGACTCATCATCCAGCGCAACATGGCTCTCTTCTTCTCAGGAGGTGATCGGAAGGAATTGAAGTTAAGAGTGACTGGTAGGATTTGGAAGGAACAGTGA 918 44.77 MASGNTYFDDMRSKSEVIDPPQSEDMMEVSEHVNDPAQTTLKPNVTVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSFGCLGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGTGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20385193 20393370 + Vvi13g1005 Vvi13g1005 774791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1005 305 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270
Vvi13g1005 305 SUPERFAMILY RING/U-box 49 97 - -
Vvi13g1005 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 5 305 - -
Vvi13g1005 305 CDD Sina 171 299 - -
Vvi13g1005 305 CDD RING-HC_SIAHs 55 93 - -
Vvi13g1005 305 Pfam Seven in absentia protein family 99 298 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vvi13g1005 305 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 5 305 - -
Vvi13g1005 305 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Vvi13g1005 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 298 IPR008974 GO:0005515
Vvi13g1005 305 SUPERFAMILY TRAF domain-like 110 302 - -
Vvi13g1005 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 165 IPR013083 -
Vvi13g1005 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 109 IPR013083 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1005 K04506 - vvi:100244678 649.818