Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g101 ATGGGCGGAAATTCACCCTGCGCCTCCTGCAAGCTCCTCCGCCGCCGATGCGCCAAGGACTGCATCTTCGCCCCCTACTTCCCTTCGGACGACCCCCACAAGTTCTCCATCGTTCACAAGGTCTTCGGCGCCAGCAATGTCAGCAAAATGCTGCAGGAGCTGCCGGTTCATCAGAGAGCAGATGCAGTGAGCAGTCTAGTATACGAGGCGAATGCGAGAGTTAGAGACCCGGTTTACGGGTGTGTCGGAGCCATATCATACCTGCAGACTCAGGTTTCTCAGCTCCAAATGCAGCTGGCCGTGGCTCAAGCCGAGATATTCTGCATCCAGATGCAGCAAGAGCAGCAAGTCAAAAACAAAGTTTATCAACAATCCGTGTAA 381 54.33 MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFSIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQTQVSQLQMQLAVAQAEIFCIQMQQEQQVKNKVYQQSV* 127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1022035 1023024 + Vvi13g101 Vvi13g101 773887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g101 126 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 117 - -
Vvi13g101 126 Coils Coil 85 105 - -
Vvi13g101 126 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 117 - -
Vvi13g101 126 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Vvi13g101 126 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g686 Vvi13g101 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13842 PF03195 LOB 7.00E-43 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g101 - - vvi:100243391 235.728