Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1014 ATGCCAGACGTGCAGGTCCTTGTGAATGAATTCATAATCAAGCTAAAAAAACGTAAGGTTGAGGGCTCACAGGCAACAGCAAGGATGACTGCTGAATTGCTCCGCTCAGTCATTTCACAGCAGCGAGTTCCCTACAATAACCAGGCTGGGGCTCTGATCGACGCCATAAAGGCTGTTGGAGAGCAGCTGATTGCTGCCAATCCTGTTGAGCTTGCTGTTGGTAATATTGTGCGGCGGGTTTTGCATATTATTAGGGAGGAGGACCTTTCTCTTGCAACTGCCGCTGTGGCTGGGCTGAATTTATCAGCTGTAAGTGATGATGAAGATGATGGCGAGCGAGAGGACCACCCTGTTTTATCAGCTGCTGCTGTTGCTGCTGCTGCCAGAAGCACTCTGCGTCCCCCTTCTTTACAAACCCTTCTTGAGGACATGCCTGACTCAGCAGCTGTTCCTCAAAGTTCTTCTTCTGGTGGTGATTCTGAAGGAAAAAGCAAATCTGCTGATAAAAGTTCAAGGAGCCGGAAGCTGAAGCATGACATTATTGAGGCAGTTAATGAACTTATTCAAGATATCGCCACTTGCCATGAACAGATTTCTGAGCAAGCAGTGGAGCACATTCATCAAAATGAGGTTATATTAACTTTAGGCCGGTCGAGAACAGTAATGGAATTTCTTTGTGCCGCAAAGGAGAAAAAAAGATCATTCCGGGTATTTGTTGCAGAGGGCGCTCCAAGGTACCAGGGGCATGTGCTTGCAAAAGAATTGGTTGCAAGAGGTTTACAGACCACTCTGATCACTGATTCTGCAGTTTTTGCCATGATTTCTCGTGTGAACATGGTTATAGTTGGAGCTCATGCTGTAATGGCGAATGGTGGGGTTATAGCACCTGTTGGGTTAAATATGGTTGCACTAGCTGCTCAGAGGCATGCTGTCCCTTTTGTTGTACTTGCTGGCACTCACAAGTTGTGCCCTTTGTATCCACACAATCCAGAGGTCTTATTGAATGAATTGAAATCCCCATCTGAGCTGCTGGATTTTGGAGAATTCTCAGATTGTATGGACTTTGGAAGTGGCAATGGTTCCCCTCTTCTTCATGTTGTCAATCCTGCATTTGATTATGTGCCACCAAAGCTTGTTAGTCTATTTATCACTGACACAGGGGGACATAACCCATCATACATGTACCGGCTCATTGCGGACTATTACTCTGCTGATGATCTGGTGGTGCAGCGGAGACCTGCATCTGGAAATTGA 1254 46.25 MPDVQVLVNEFIIKLKKRKVEGSQATARMTAELLRSVISQQRVPYNNQAGALIDAIKAVGEQLIAANPVELAVGNIVRRVLHIIREEDLSLATAAVAGLNLSAVSDDEDDGEREDHPVLSAAAVAAAARSTLRPPSLQTLLEDMPDSAAVPQSSSSGGDSEGKSKSADKSSRSRKLKHDIIEAVNELIQDIATCHEQISEQAVEHIHQNEVILTLGRSRTVMEFLCAAKEKKRSFRVFVAEGAPRYQGHVLAKELVARGLQTTLITDSAVFAMISRVNMVIVGAHAVMANGGVIAPVGLNMVALAAQRHAVPFVVLAGTHKLCPLYPHNPEVLLNELKSPSELLDFGEFSDCMDFGSGNGSPLLHVVNPAFDYVPPKLVSLFITDTGGHNPSYMYRLIADYYSADDLVVQRRPASGN* 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20496393 20507160 + Vvi13g1014 Vvi13g1014 774800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1014 417 Pfam Initiation factor 2 subunit family 19 391 IPR000649 GO:0044237
Vvi13g1014 417 Gene3D - 194 401 IPR042529 -
Vvi13g1014 417 SUPERFAMILY NagB/RpiA/CoA transferase-like 8 406 IPR037171 -
Vvi13g1014 417 MobiDBLite consensus disorder prediction 145 175 - -
Vvi13g1014 417 PANTHER BNAA01G32370D PROTEIN 54 409 - -
Vvi13g1014 417 PANTHER BNAA01G32370D PROTEIN 9 54 - -
Vvi13g1014 417 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 9 54 - -
Vvi13g1014 417 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 54 409 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1014 K03754 - vvi:100256712 779.63