Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1051 ATGGAGAAGTATTTGAGGGAGAATTTTGACGTTGAGCCGAAGCGAGCTTCGGAGGAAGCTCGGAGACGATGGAGATCGGCCGTGTCTGTCGTCAAGAATCCCCGGAGACGGTTCCGGATGGTTGCCGATCTCGCTAAGCGATCCGAAACGGAAAGAAAGCGCCAGAAAATTCAGGAAAAGATTCGAGTAGCTTTATACGTGCAAAAGGCAGCATTGCATTTCATTGAGGCGGGTCATCGTATTGAATACAACCTCTCCGAAGAGGTTAGGCAAGCTGGTTATGAAATTGAACCAGATGAACTAGCATCTATTGTTCGAGCTCATGATATCAAGGGGCTGGAATTCAATGGTGGAGCTGAAGGATTAGCAGGAAAAGTGTGTGTCTCACTGGATACCGGTGTCAAAACAAGCGAAGTGCATTCTAGACAAAGTATCTATGGCCTCAACCAATATGTTGAAAAGCCTTCTGGAACTTTCTGGATGTTTATCTGGGAAGCCCTGCAAGACCTTACTCTAATAATCCTCATGGTATGTGCCGCGGTTTCTATAGGTGTTGGGATCGCCACAGAGGGATGGCCAAAAGGTATGTACGATGGGTTAGGAATAGTACTCAGTATTTTCTTAGTAGTGATGGTTACTGCAACTAGTGACTACAAGCAGTCCTTGCAATTCAAGGACTTGGACAAGGAGAAGAAAAATATAATTGTTCAGGTGACCAGAGATGGATACAGACAAAAGATTTCTATATATGATTTGGTGGTTGGAGACATTGTTCATCTATCCATTGGAGATCAGGTTCCAGCTGATGGGGTCTTCATATCAGGTCACAGTTTATCAATTGATGAATCAAGCTTGTCAGGTGAGAGTGAGCCGGTGAATATCAACAAACAGAGGCCATTTCTCCTATCTGGAACCAAGGTACAAGATGGGTCTGGGAAAATGCTGGTCACATCAGTCGGTATGAGGACTGAATGGGGAAGATTGATGGTTACTCTGAGTGAAGGGGGAGAAGATGAGACACCACTGCAGGTGAAGCTTAATGGAGTGGCGACCATTATTGGGAAGATTGGTCTGGCTTTTGCTGTGCTGACATTTTTGGTGCTGATGGGACGGTTTCTGCTCCAGAAGGCACTTCACAGCAACATCACAGACTGGTCTTTCAGCGATGCAGTGACAATTTTGAATTATTTTGCTATTGCAGTTACTATAATTGTGGTTGCAGTCCCAGAAGGGCTTCCATTGGCAGTGACATTGAGCCTTGCTTTTGCAATGAAGAAATTGATGAATGCTAAGGCACTCGTGCGGCATTTATCTGCTTCGATAGAAACTAACGACAGTAAAGATGTATTTCACGTTTTGGGTACTCCAACAGAAACAGCTATATTAGAGTTTGGCTTGCATTTAGGTGGTGAGAGTGCCCACTACAAGGAGTCTGAGATAGTGAAGGTTGAGCCTTTCAATTCAGTCAAGAAAAAGATGTCCGTGCTCGTAAGTCTTCCTGCTGGTGGGTTCCGAGCATTCTGCAAAGGCGCATCAGAAATTGTTTTAGAGATGTGCGACAAGATTATTAATACCAATGGAGAATTTGTGTCCCTGTCTGCAGACCAGAGAAAGAACATCACAGATGTCATAAATGGTTTTGCCTGCGAAGCCCTTAGAACTCTATGCTTGGCTTTCAAGGATATAGAAAACAGTTCTAAGGACGATGATATTCCTTATAGTAACTATACACTAATAGCAGTTCTTGGAATCAAGGATCCAGTTCGCCCTGGAGTGAAGGATGCTGTTCGGACTTGTTTAGCTGCTGGGATTACAGTGCGGATGGTCACAGGCGACAATATCAATACAGCAAAAGCCATAGCTAAAGAATGTGGCATATTGACTGATGATGGTCTGGCAATAGAAGGGCCAGATTTTCGTAATAAGAGCCCCCAGGAGATGAAGGAGTTGATACCAAAACTTCAGGTGATGGCTCGATCATTGCCTTTGGACAAGCACACCTTGGTAAGCCAGCTAAGAAATTCATTTAAAGAAGTTGTGGCAGTGACTGGCGATGGGACCAACGATGCTCCTGCTTTGCATGAGGCGGACATTGGACTTGCCATGGGCATAGCAGGAACTGAGGTGGCAAAAGAAAATGCGGATGTGATTATAATGGATGATAACTTCTCGACTATAGTGAATGTTGCCAGATGGGGCCGGTCAGTCTACATAAATATTCAAAAATTTGTGCAGTTCCAGTTAACAGTCAACATTGTTGCTCTCATGATCAACTTTGTTTCTGCATGCATCTCAGGATCTGCTCCTCTTACTGCTGTCCAGTTGCTCTGGGTGAATATGATCATGGACACTCTTGGTGCATTAGCCTTGGCTACAGAGGCTCCAACTGATGGCCTGATGAAACGAGCTCCAGTTGGTAGGAATGCAAATTTCATCACCCGAACCATGTGGAGAAATATCATAGGCCAAAGCATCTATCAACTAGCCGTCCTTTTGGTCTTCACCTTCCAAGGGAAACGGCTTCTAAAGCTCACTGGTTCAGACGCCAGTAAAATTCTTAACACATTCATATTCAATGCCTTCGTCTTTTGCCAGGTATTCAATGAAATAAACAGCCGTGATATGGAGAAGATAAATGTTTTCCAAGACATGTTCAGCAACTGGATATTCATAATCATAGTCGTCTCCTCAGTTACTTTCCAGGCCATAATGGTAGAATTTTTGGGCACTTTCGCCGGAACAGTGCCACTGAGCTGGGAGTTGTGGCTATTAAGCATCTTAATCGGGGCTGTGAGCTTAATCATCGCAGTTATCCTAAAGTGCATTCCCGTCGAACCAACAAAGTACACAGCCATTGCCAAGCATCACGATGGCTATGAACCACTCCCAAGTGGTCCGGACCGGGCATGA 2910 44.64 MEKYLRENFDVEPKRASEEARRRWRSAVSVVKNPRRRFRMVADLAKRSETERKRQKIQEKIRVALYVQKAALHFIEAGHRIEYNLSEEVRQAGYEIEPDELASIVRAHDIKGLEFNGGAEGLAGKVCVSLDTGVKTSEVHSRQSIYGLNQYVEKPSGTFWMFIWEALQDLTLIILMVCAAVSIGVGIATEGWPKGMYDGLGIVLSIFLVVMVTATSDYKQSLQFKDLDKEKKNIIVQVTRDGYRQKISIYDLVVGDIVHLSIGDQVPADGVFISGHSLSIDESSLSGESEPVNINKQRPFLLSGTKVQDGSGKMLVTSVGMRTEWGRLMVTLSEGGEDETPLQVKLNGVATIIGKIGLAFAVLTFLVLMGRFLLQKALHSNITDWSFSDAVTILNYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNAKALVRHLSASIETNDSKDVFHVLGTPTETAILEFGLHLGGESAHYKESEIVKVEPFNSVKKKMSVLVSLPAGGFRAFCKGASEIVLEMCDKIINTNGEFVSLSADQRKNITDVINGFACEALRTLCLAFKDIENSSKDDDIPYSNYTLIAVLGIKDPVRPGVKDAVRTCLAAGITVRMVTGDNINTAKAIAKECGILTDDGLAIEGPDFRNKSPQEMKELIPKLQVMARSLPLDKHTLVSQLRNSFKEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRSVYINIQKFVQFQLTVNIVALMINFVSACISGSAPLTAVQLLWVNMIMDTLGALALATEAPTDGLMKRAPVGRNANFITRTMWRNIIGQSIYQLAVLLVFTFQGKRLLKLTGSDASKILNTFIFNAFVFCQVFNEINSRDMEKINVFQDMFSNWIFIIIVVSSVTFQAIMVEFLGTFAGTVPLSWELWLLSILIGAVSLIIAVILKCIPVEPTKYTAIAKHHDGYEPLPSGPDRA* 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 21215049 21233597 - Vvi13g1051 Vvi13g1051 774837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1051 969 PANTHER CATION TRANSPORTING ATPASE 3 443 - -
Vvi13g1051 969 PANTHER CATION TRANSPORTING ATPASE 445 952 - -
Vvi13g1051 969 Pfam Cation transporting ATPase, C-terminus 768 941 IPR006068 -
Vvi13g1051 969 Pfam Cation transporter/ATPase, N-terminus 116 182 IPR004014 -
Vvi13g1051 969 PANTHER CALCIUM-TRANSPORTING ATPASE 3 443 - -
Vvi13g1051 969 PANTHER CALCIUM-TRANSPORTING ATPASE 445 952 - -
Vvi13g1051 969 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Vvi13g1051 969 Pfam E1-E2 ATPase 235 428 - -
Vvi13g1051 969 SUPERFAMILY Calcium ATPase, transduction domain A 234 329 IPR008250 -
Vvi13g1051 969 Pfam Cation transport ATPase (P-type) 438 522 - -
Vvi13g1051 969 Gene3D - 441 587 IPR023299 GO:0000166
Vvi13g1051 969 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 944 IPR023298 -
Vvi13g1051 969 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Vvi13g1051 969 PRINTS P-type cation-transporting ATPase superfamily signature 580 591 - -
Vvi13g1051 969 PRINTS P-type cation-transporting ATPase superfamily signature 602 612 - -
Vvi13g1051 969 PRINTS P-type cation-transporting ATPase superfamily signature 683 702 - -
Vvi13g1051 969 PRINTS P-type cation-transporting ATPase superfamily signature 707 719 - -
Vvi13g1051 969 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 653 771 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi13g1051 969 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 202 628 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi13g1051 969 CDD P-type_ATPase_Ca_PMCA-like 142 816 - -
Vvi13g1051 969 Gene3D - 16 77 - -
Vvi13g1051 969 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 439 592 IPR023299 GO:0000166
Vvi13g1051 969 SUPERFAMILY HAD-like 576 788 IPR036412 -
Vvi13g1051 969 PRINTS H+-transporting ATPase (proton pump) signature 540 558 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi13g1051 969 PRINTS H+-transporting ATPase (proton pump) signature 683 699 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi13g1051 969 PRINTS H+-transporting ATPase (proton pump) signature 715 740 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vvi13g1051 969 Gene3D - 588 728 IPR023214 -
Vvi13g1051 969 Gene3D - 132 333 - -
Vvi13g1051 969 SMART Cation_ATPase_N_a_2 118 187 IPR004014 -
Vvi13g1051 969 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 443 945 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vvi13g1051 969 Gene3D - 165 439 - -
Vvi13g1051 969 Gene3D - 729 942 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1051 K01537 - vvi:100246545 1804.65