Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g107 ATGTCGTCCGGAGTCATTGAAAGGAAGAGAAAGTCTCGAAGCCGGCGAAGTGGACCTAATTCCGTGGCCGAGACTCTTGCAAGATGGAAACAATACAACGATATACTTGATTCTGTCCGCAAAGCTCCAGCAAAAGGTTCAAAGAAGGGGTGTATGAAAGGTAAAGGGGGGCCCGAGAATTCAATATGTGGTTACAGGGGTGTGAGGCAGAGGACATGGGGTAAATGGGTTGCTGAGATTCGGGAGCCAAACAGAGGGAGTAGGCTATGGTTAGGTACCTTCCCAACTGCCATTGAAGCTGCTCTTGCATATGACGAAGCTGCAAGGGCCATGTATGGTTCTTCTGCCCGTCTTAATCTTCCAAATTACACCACGTCTTTGAAGGATTCTTCTTCGGCTCCAACTACATCGGTTTCTGATTCCACCACGACAACATCCAACTACTCTGAAGTGTGTGCATATGAGGATTCAAAGAAGCCTGTTTTACCGAGTATCAAACATGAAAAAAACGGTCATTCTTTGGATGCCATGTACTTCAAGAATGAAGACGGAGGACAGGATTTCTTGGAAGGATTTCCTATGGATGAAATGTTTGATGTGGATGAATTTTTGAGGGCCATAGACTCTGACCCCCTTGCTAGCTATGGTACAAGGCAGGAATTGGGTCATGATTCTGGGCAAGTAGGGAGCTTTGAAACTGATAATATGCAGTGGGAAAAGCCAACGGATTTATCTTACCAACTGCAAAATCCAGATGCTAAGCTTCTTGGGAGTTTGAATCATATGGAGCAAGTGCCTTCTGACTTTGATTATTGCTATGGCTTCTTGCAGCCAGGCAAGCAGTTAGATCCCTCATCGCCGGAGTCCGGTTTCACTCTAGCTGTTTTCAGTGTATTACAGGTATATCACTTGATACCATTTGCGGCTGTGAATATTGAGGAGATTGAGCTGACTCTCGAAACAATATGCGGAAGAGGAATTTATGTCAAAACCAGCATCCATTTCATGCATACTAGGAATTTATGTCGAAACCAGCATCCATTTCATGCACATCCTTTTGAGGCATTTTACTTTGGGTCATGGCAAGCCATAGAACTCATGAGGATTGAGGATGGAACAGTAGCCCTACATCTGGCAGAGAGTGAGTATGTAATTGAGGAGAAAAGTCCAATCCCAAACCTTCGGATAAGGCCAAGGAAAGCAACTTTGTCTGATTGTACTTGCTTTCTGAGGCCTGGCACAGAAATAACCGTGCTTTGGACCTTGCAACAGTCAGAAAGTTCAGATGAAGAAAATCGAGAGCCGGTGTGGATTGATGCTAAGATAAGTTCCATTGAGAGGAGGCCTCACGAGCCCGAATGTTCATGCCAATTTTTTGTCAACTTCTACATTACCCAAGACCCCCTTGGCACAGAGAAGGGAACACTTAGCAAGGATATCAGTGTTGTAGAACTCGATCAGATTTCTATCCTCCAAAAACTTGGAAAATATCCTTGTGAAGATGAGCACTACCGGTGGAAATTTTCTGAGGACTGCTCTTTGCTGCAAAGAACTAAATTGTTCTTGGGGAAATTCTCATCTGATCTTTCATGGCTTGTTGTTACATCAGTTTTAAAGCAAGCTGTATTTGACGTAAGGTCAGTGCAAAATAGGATTGTCTATCAAATTGTGGGTGGTGATCATGATAAGGTTTCATTAAATGCTGTAAATTTTAGAGTAGACAATGGAATTTCCACTCCTGTCATATTCCCCTTTGTTCCTGCTGATACTATTGAGGCTGATCCTTTAAATGGCACCAATGAAGCTGGACCATTACCATTCTGTGATATTGTGGACTTACGGCGCTCCAAGCGTCGAAATGTACAACCTGATCGTTTCTTTAGCTTAGGTGGCTTTTCAGAGTCGGATATTGGGTCAGTTCGAGCGGGGATACACAAGGTAGACTACTGGAGAAAGGAAGAAATGCCATTGGCATTGCCAGATGAGGGGGACGTGCATTCAATTTTTTCAGAAAAGCATATTATTGATTATGAAAAAGGGGCCCACTCTCTTCAAATAGATTCCTATGAGGATTTCCTTGTCTGCAAAAGCAAGGACAGGTCAAGGGAGGTAAAGCCAATTCTGGCTGCACAAAATGAAGATCAACATCAATTTGCTATTGTTCCTGTGCCTCTCATTATTGAACCAATAGCACATGGAGAAGATCATCTCCATGATGAGACTCCTTGGAATGAGTCAGGAGAGATTGGGGAGATATCTCCCAAGTATTACTGCACAAATGGTGTTCCTAAATTACAGCGTAAGAATATGTCTGATTTATATATGGAGGTCGAGAGCAGATGGGAAGGGAAAGGTCCAATTAGGAAACTCCGAAGAAAAAGGGGTTTTACTATACGTACGAAAACAGAGAGTTATGGTGAAGTAAGACCTCATAAAAAGAGACCCTTCAGTGAACCTGGGTATAAGGAAGTGATAGAAGCTTACATGAAAAACATAGAATCCACAATCAATAAAGAACAGCCACTTGTTATCGACCAATGGAAAGAACTTCAGGTGAGAAATGACTTGAACCAAAGAAGGGACTGCAACTCACCATCTTCGGTTGGGGATCAGGAAGAAAGCTCAGAAACTGAAATGTTGTGGAGAGAAATGGAATTCTCCATTGCATCATCTTATCTTCTAGAAGAAAATGAGGGGTCAAATGTTGAAGTCTTGAAGGAGGTTGTGCAAGAATCAAGTAACATTAGTGAACAAGTTTGCCAGCACGAATACATATTGGACGAAGAAATTGGGGTTCTATGTCAGTTATGTGGCTTTGTGAGCACTGAAATAAAAGATGTCTCACCCCCCTTTTTTCAACCCACTGGTTGGATCACAAACAGAGAATGGCGTGATGAAGAAAATTCAAAGCGTAAGCAGGCTGAAAATGATGGCTTCAATCTTTTCTCCATTCCTGCTTCCTCTGACACACCCTTGTCAGAAGGAAATGACAATGTGTGGGCCTTAGTACCTGATCTGAGAAAGAAATTACGGTTACACCAGAAGAAAGCTTTTGAGTTTCTATGGAAAAATATTGCTGGCTCTATGGTACCAGCACTAATGGAACAAGAAGTCAAGAGAAGAGGTGGTTGTGTTATTTCTCATTCTCCTGGAGCTGGAAAAACTTTTCTTGTTATCTCGTTCCTGGTGAGCTACTTGAAGTTATTTCCCGGAAAACGGCCTTTGGTCCTTGCTCCAAAGACAACACTCTATACCTGGTACAAAGAAATTATTAAGTGGAAGGTTCCTGTTCCAGTTTATCAAATCCACGGTTGTAGAACCTACAGATATGAAATCTACAAACACAAAGTGGAAACTTCTCCAGGGATTCCAAGACCGAACCAAGATGTTATGCATGTTCTTGATTGCCTAGAGAAAATACAGAAGTGGCATGCACATCCAAGTATTCTTCTCATGGGTTATACCTCGTTTCTGTCATTGATGCGAGAAGATTCAAAGTTTATCCATAGGAGATACATGGGTGAAGTTCTGCGGCAAAGTCCAGGAATTCTTGTACTCGATGAAGGGCACAACCCAAGAAGCACAGGATCAAGGTTAAGGAAAGCTCTGATGAAAGTTAAAACAAACCTGAGAATTTTGCTTTCAGGTACATTGTTTCAGAATAATTTCAGTGAATATTTCAACACCCTTTGCTTAGCAAGACCGAAGTTTGTCAATGAGGTGTTAAGGGAATTGGACCCAAAATTTAAGAGGAACAAGAATCGGAGGAAAAGAAGATACAGTTCAACAGAATCTCGGGCAAGAAAATTCTTCACAGATGAGATTGCAAAGCGAATCAATTCAAATGTGCCAGAAGAACAGATAGAGGGCCTAAACATGTTAAGGAATCTCACTAGTAAATTTATAGATGTGTATGAAGGTGGAAGTTCTGACAACCTACCTGGTTTACAAGTTTACACCTTGTTGATGAAATCAACTACTATACAACAACAGTTTCTGTCAAAACTTCAGAAGAAAAAGGATGAATATAAAGGATATCCTCTGGAATTGGAGCTTTTGGTAACCCTTGGATCAATACATCCTTGGTTGATCACAACTGCTGCCTGTGCTGATAAATACTTTAGTAGGGAGGAATTGCTGGAGCTTAAGAAGCACAAGGATGATGTGAAGAAGGGGTCAAAAGTGAAATTTGTTCTAAGTCTTGTGAATAGATGTATCATTAGAAAGGAAAAGATTTTGATCTTTTGCCATAACATCTCACCCATTAATTTATTTGTAGATATATTTGATAAGCTCTATAAGTGGAAGAAGGGTGAAGATGTTTTGGTCCTTCAAGGGGACCTAGAGCTATTTGAACGGGGCAGAGTGATGGATCAGTTTGAAGAACCAGGTGGTGCCTCAAAAGTACTACTTGCTTCCATTACAGCTTGTGCTGAAGGCATTAGCTTAACTGCAGCTTCACGGGTGATATTGTTGGACACAGAGTGGAATCCTTCAAAGCAAAAGCAAGCTGTTGCACGGGCATTTCGGCCTGGTCAGGAGAGGGTGGTTTATGTCTATCAGCTCTTGGAAACAGACACACTGGAAGAAGAAAAGAATAGTAGGACCAACTGGAAGGAGTGGGTTTCAAGTATGATATTTAGTGAAGCATTTGTGGAGGACCCTTCATGCTGGCAAGCGGAAAAAATTGAAGATGATTTATTAAGGGAGATAGTCGAGGAGGACTGGGCTAAATCAATCCATATGATAATGAAAAACGAGAAAGCTTCAAATGGGTTGATCAGAGATGTGGTTAAAGAAATGTCATTGCAGAATATTCAGCATATCATGGTCATTATGTGTGTGTATTGTATCATTTCAATGTATAATATGCATAATTTTGTGTGTATTCAGAATTCACTTGTGTGA 4908 41.46 MSSGVIERKRKSRSRRSGPNSVAETLARWKQYNDILDSVRKAPAKGSKKGCMKGKGGPENSICGYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARAMYGSSARLNLPNYTTSLKDSSSAPTTSVSDSTTTTSNYSEVCAYEDSKKPVLPSIKHEKNGHSLDAMYFKNEDGGQDFLEGFPMDEMFDVDEFLRAIDSDPLASYGTRQELGHDSGQVGSFETDNMQWEKPTDLSYQLQNPDAKLLGSLNHMEQVPSDFDYCYGFLQPGKQLDPSSPESGFTLAVFSVLQVYHLIPFAAVNIEEIELTLETICGRGIYVKTSIHFMHTRNLCRNQHPFHAHPFEAFYFGSWQAIELMRIEDGTVALHLAESEYVIEEKSPIPNLRIRPRKATLSDCTCFLRPGTEITVLWTLQQSESSDEENREPVWIDAKISSIERRPHEPECSCQFFVNFYITQDPLGTEKGTLSKDISVVELDQISILQKLGKYPCEDEHYRWKFSEDCSLLQRTKLFLGKFSSDLSWLVVTSVLKQAVFDVRSVQNRIVYQIVGGDHDKVSLNAVNFRVDNGISTPVIFPFVPADTIEADPLNGTNEAGPLPFCDIVDLRRSKRRNVQPDRFFSLGGFSESDIGSVRAGIHKVDYWRKEEMPLALPDEGDVHSIFSEKHIIDYEKGAHSLQIDSYEDFLVCKSKDRSREVKPILAAQNEDQHQFAIVPVPLIIEPIAHGEDHLHDETPWNESGEIGEISPKYYCTNGVPKLQRKNMSDLYMEVESRWEGKGPIRKLRRKRGFTIRTKTESYGEVRPHKKRPFSEPGYKEVIEAYMKNIESTINKEQPLVIDQWKELQVRNDLNQRRDCNSPSSVGDQEESSETEMLWREMEFSIASSYLLEENEGSNVEVLKEVVQESSNISEQVCQHEYILDEEIGVLCQLCGFVSTEIKDVSPPFFQPTGWITNREWRDEENSKRKQAENDGFNLFSIPASSDTPLSEGNDNVWALVPDLRKKLRLHQKKAFEFLWKNIAGSMVPALMEQEVKRRGGCVISHSPGAGKTFLVISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEIIKWKVPVPVYQIHGCRTYRYEIYKHKVETSPGIPRPNQDVMHVLDCLEKIQKWHAHPSILLMGYTSFLSLMREDSKFIHRRYMGEVLRQSPGILVLDEGHNPRSTGSRLRKALMKVKTNLRILLSGTLFQNNFSEYFNTLCLARPKFVNEVLRELDPKFKRNKNRRKRRYSSTESRARKFFTDEIAKRINSNVPEEQIEGLNMLRNLTSKFIDVYEGGSSDNLPGLQVYTLLMKSTTIQQQFLSKLQKKKDEYKGYPLELELLVTLGSIHPWLITTAACADKYFSREELLELKKHKDDVKKGSKVKFVLSLVNRCIIRKEKILIFCHNISPINLFVDIFDKLYKWKKGEDVLVLQGDLELFERGRVMDQFEEPGGASKVLLASITACAEGISLTAASRVILLDTEWNPSKQKQAVARAFRPGQERVVYVYQLLETDTLEEEKNSRTNWKEWVSSMIFSEAFVEDPSCWQAEKIEDDLLREIVEEDWAKSIHMIMKNEKASNGLIRDVVKEMSLQNIQHIMVIMCVYCIISMYNMHNFVCIQNSLV* 1636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1072520 1084172 - Vvi13g107 Vvi13g107 773893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g107 1635 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Vvi13g107 1635 CDD SF2_C_SNF 1386 1523 - -
Vvi13g107 1635 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 352 1590 IPR044567 GO:0080188
Vvi13g107 1635 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Vvi13g107 1635 Pfam SNF2-related domain 1019 1284 IPR000330 GO:0005524|GO:0140658
Vvi13g107 1635 MobiDBLite consensus disorder prediction 124 145 - -
Vvi13g107 1635 CDD AP2 63 122 IPR001471 GO:0003700|GO:0006355
Vvi13g107 1635 SMART ultradead3 1006 1241 IPR014001 -
Vvi13g107 1635 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Vvi13g107 1635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 999 1263 IPR027417 -
Vvi13g107 1635 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1035 1236 IPR014001 -
Vvi13g107 1635 SMART helicmild6 1427 1512 IPR001650 -
Vvi13g107 1635 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Vvi13g107 1635 CDD DEXHc_ATRX-like 1010 1243 - -
Vvi13g107 1635 Gene3D - 988 1283 IPR038718 -
Vvi13g107 1635 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 352 1590 - -
Vvi13g107 1635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1181 1550 IPR027417 -
Vvi13g107 1635 MobiDBLite consensus disorder prediction 1 22 - -
Vvi13g107 1635 Pfam Helicase conserved C-terminal domain 1405 1511 IPR001650 -
Vvi13g107 1635 Gene3D - 1316 1606 IPR027417 -
Vvi13g107 1635 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Vvi13g107 1635 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Vvi13g107 1635 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Vvi13g107 1635 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1401 1588 IPR001650 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13846 PF00176 SNF2_N 6.70E-17 CL0023 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g107 K10875 - vvi:100250037 2513.41