Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1074 ATGGCGGAGCGTCGCTCTAAACGCCCCAAAATCACCAGAGGGGAAGATGATTATTTACCTGGGAATATAACTGAGATTGAGCTCCATAATTTTATGACATTCAATGATCTGAAATGCAAACCGGGTTCACGTTTAAATCTTGTAATTGGACCCAACGGATCAGGGAAAAGCTCTCTCGTGTGTGCCATTGCCCTAGGTCTTGGCGGTGATCCTCAGCTGCTTGGAAGGGCTTCTAGTATTGGTGCATATGTGAAGCGTGGGGAGGAGTCGGGATACATCAAGATTTCCTTGAGAGGGGACACTGAAGAGGAGCAGATTACCATTATGCGCAAAATAGATACACGTAACAAGTCTGAGTGGTTGTTCAATGGCAAAGTGGTGCCAAAAAAAGATGTAATTGAAATCGTTCGAAGGTTCAATATCCAAGTCAACAATTTGACTCAATTCTTGCCACAAGACAGGGTCTCTGAATTTGCTAAGTTAACTCCTGTGCAACTTCTAGAAGAAACAGAAAAGGCTGTTGGTGATCCTCAACTACCAGTCCAACATTGTGCTCTTGTTCTTAAAAGTAGAGAACTGAAGAAACTTGAAAAAGCTGTCGAGCAGAATGGGGAAATGTTGAATTGTTTGAAGACACTTAATTCTGAACGAGAAAAAGATGTTGAGCGTGTCCGTCAAAGACAAGAACTTCTAGCAAAGGTTGAATCCATGAAAAAGAAACTGCCATGGTTGAAGTACGATATGCAGAAGGTCCGATATATGGAAGCTAAAGAGCAGGAGAATGATGCAAAAAAGAAGTTGGATGAAGCTGCTAAGACTTTGAATGATATCAGAGAACCTATAGAGAAACAGAGGCAGGAGAAAGCAGCACTAGATGCTAAATGCAAAAAAGTTAGTGGGCTCATGAATGGCAATTCTAAGAGGCGCATGGAACTTCTAGAGAAGGAAAATCGTTTGGGAGTGCAAGCACGAGGAAAATACAATGAAATGGAAGAGTTGAGGAGGCAAGAAGAATCACGTCAACAAAGAATTTCAAAAGCTAAGGAAGATCTTGTTGCTGCTGAACTAGAACTTGCTAGCCTGCCTCCCTATGAACATCCTAAAGATGAAATTGAAAGATTAGGATCTCAAATTCTTGAGCTAGAATTCTCTGCAAGTCAAAAAAGGCTCGTAAAGTCAGAAAAGGAAAAACTCTTAGGTCAGAAGAAAGGAGCCCTGAGGCAGTGTGTAGATAGGTTGAAGGATATGGAAAATAAAAATAATAAACTGTTACAGGCATTGCAAAATTCCGGAGCTGAAAAGATATTTGAAGCTTATCACTGGTTGCAGGAACATCGCCATGAGTTGAATAAGGACGTGTATGGTCCTGTGTTGCTTGAGGTTAATGTGTCACATCGGATTCATGCAGACTATTTGGAAGGTCATATCCCTTATTATATTTGGAAGTCCTTCATAACTCAGGATCCTGATGACCGGGATTTCTTAGTAAAAAACTTGAGGTTATTTGATGTTCCTGTCTTAAATTATGTGCGGAATGAAGATCGTCATAAAGAACCCTTTCAAATATCTGAGGAGATGCGCAAACTTGGCATCTCCTCCCGGCTTGACCAAGTGTTTGATTCTCCTGATGCTGTCAAGGAGGTTTTGACTAGCCAATTTGCTCTGGAACATTCGTATATTGGATCCAGGGAAACTGATCAGAAGGCTGATGAGGTTTCGAAATTAGGAATTTTGGATTTTTGGACTCCAGAAAATCACTACAGATGGTCTGTTTCTAGATATGGTGGTCATGTTTCAGCAATTGTTGAACCGGTGGCTCGCTCACGTCTTCTTGTCTGTAGTACGGATACTGGGGAAATTGAAAGGCTGAGGTCCAAGAAAAAGGAGCTTGAAGAGATCATTGATGATTTAGAGGAAAATTTCAAATCACTTCAGATAGAACAAAGACTTTTAGAGGATGAAGCAGCTAAACTTCATAAGCAGCGGGAGGAGATTATCAATACTGTACAACTTGAGAAGAGAAAGCGTCGTGAAATGGAAAACCGAGTTAGTCAAAGAAAACGGAAATTAGAGTCTATGGAGAAGGAGGATGACTTGGATACAGTTATGGCAAAGCTCATTGACCAAGCTGCAAAATTTAACATTCAACGGTACCAATGTGTAATTGAAATTAAGAATTTACTCATTGAGTCAGTTTCCTACAAACGAACTTTCGCTGAAAAGCATATGACCTCCATTGAATTTGATGCAAAGATTAGAGAATTGGAAGTTGGTATCAAGCAGCAAGAAAGGTTTGCTATGCAAGCATCCTTGCACTTTGAGAATTGTAAGAAGGAAGTGGAGGATCATCGACAGCAACTGGCAGCTGCCAAGAGGCATGCAGAATCAATTGCCGTGATCACTCCAGTACTTGAGAAAGCATTCCTTGAGATGCCAGCTACAATAGAAGATTTGGAGGCTGCTATTCAAGATACTATCTCTCAAGCCAATTCTATTCTTTTTCTAAACCACAACATTTTGGAAGAATATGAAGAGTGTCAACAAAAGATAGAAGCCATTTCTACAAAACTGGAAGCAGATGAAAAGGAACTGAGGATGTATTTGGCAGAAATAGATGCCCTGAAGGAAAATTGGCTTACCACATTGAGAAACCTTGTTGCTCAAATAAATGAGACCTTTAGTCGAAACTTCCAAGATATGGCTGTTGCTGGAGAAGTTTCATTGGATGAGCATGATATCGATTTTGATCAATTTGGGATACTTATAAAAGTCAAGTTCAGGCAAGCAGGAGAACTTCAAGTTCTTAGCGCCCACCATCAATCTGGAGGGGAGCGCTCAGTTGCAACTATTCTGTATCTTGTTTCTCTACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGGAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTGCAAGCCAACCTAATACACCACAATGTTTCTTACTTACACCAAAGTTGCTACCGGATCTAGAATACAGTGAGGCTTGTAGCATTCTGAATATAATGAATGGGCCATGGATTGAGCAGCCTTCAAAAGTGTGGAGCAATGGAGATTGCTGGGGAACTGTCGTTGGTTTATTAGGAAAAAGCCAATGCTAA 3156 40.72 MAERRSKRPKITRGEDDYLPGNITEIELHNFMTFNDLKCKPGSRLNLVIGPNGSGKSSLVCAIALGLGGDPQLLGRASSIGAYVKRGEESGYIKISLRGDTEEEQITIMRKIDTRNKSEWLFNGKVVPKKDVIEIVRRFNIQVNNLTQFLPQDRVSEFAKLTPVQLLEETEKAVGDPQLPVQHCALVLKSRELKKLEKAVEQNGEMLNCLKTLNSEREKDVERVRQRQELLAKVESMKKKLPWLKYDMQKVRYMEAKEQENDAKKKLDEAAKTLNDIREPIEKQRQEKAALDAKCKKVSGLMNGNSKRRMELLEKENRLGVQARGKYNEMEELRRQEESRQQRISKAKEDLVAAELELASLPPYEHPKDEIERLGSQILELEFSASQKRLVKSEKEKLLGQKKGALRQCVDRLKDMENKNNKLLQALQNSGAEKIFEAYHWLQEHRHELNKDVYGPVLLEVNVSHRIHADYLEGHIPYYIWKSFITQDPDDRDFLVKNLRLFDVPVLNYVRNEDRHKEPFQISEEMRKLGISSRLDQVFDSPDAVKEVLTSQFALEHSYIGSRETDQKADEVSKLGILDFWTPENHYRWSVSRYGGHVSAIVEPVARSRLLVCSTDTGEIERLRSKKKELEEIIDDLEENFKSLQIEQRLLEDEAAKLHKQREEIINTVQLEKRKRREMENRVSQRKRKLESMEKEDDLDTVMAKLIDQAAKFNIQRYQCVIEIKNLLIESVSYKRTFAEKHMTSIEFDAKIRELEVGIKQQERFAMQASLHFENCKKEVEDHRQQLAAAKRHAESIAVITPVLEKAFLEMPATIEDLEAAIQDTISQANSILFLNHNILEEYEECQQKIEAISTKLEADEKELRMYLAEIDALKENWLTTLRNLVAQINETFSRNFQDMAVAGEVSLDEHDIDFDQFGILIKVKFRQAGELQVLSAHHQSGGERSVATILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSILNIMNGPWIEQPSKVWSNGDCWGTVVGLLGKSQC* 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 21632040 21686570 - Vvi13g1074 Vvi13g1074 774860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1074 1051 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 17 1049 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Vvi13g1074 1051 Gene3D - 22 211 IPR027417 -
Vvi13g1074 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 994 IPR027417 -
Vvi13g1074 1051 Coils Coil 773 793 - -
Vvi13g1074 1051 Coils Coil 836 877 - -
Vvi13g1074 1051 Gene3D - 847 1014 IPR027417 -
Vvi13g1074 1051 Coils Coil 406 433 - -
Vvi13g1074 1051 Coils Coil 620 696 - -
Vvi13g1074 1051 Coils Coil 253 277 - -
Vvi13g1074 1051 Coils Coil 330 350 - -
Vvi13g1074 1051 Pfam RecF/RecN/SMC N terminal domain 23 991 IPR003395 -
Vvi13g1074 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 1002 IPR027417 -
Vvi13g1074 1051 CDD ABC_SMC5_euk 924 1026 - -
Vvi13g1074 1051 CDD ABC_SMC5_euk 21 178 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1074 K22803 - vvi:100249983 2032.3