Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1074 ATGGCGGAGCGTCGCTCTAAACGCCCCAAAATCACCAGAGGGGAAGATGATTATTTACCTGGGAATATAACTGAGATTGAGCTCCATAATTTTATGACATTCAATGATCTGAAATGCAAACCGGGTTCACGTTTAAATCTTGTAATTGGACCCAACGGATCAGGGAAAAGCTCTCTCGTGTGTGCCATTGCCCTAGGTCTTGGCGGTGATCCTCAGCTGCTTGGAAGGGCTTCTAGTATTGGTGCATATGTGAAGCGTGGGGAGGAGTCGGGATACATCAAGATTTCCTTGAGAGGGGACACTGAAGAGGAGCAGATTACCATTATGCGCAAAATAGATACACGTAACAAGTCTGAGTGGTTGTTCAATGGCAAAGTGGTGCCAAAAAAAGATGTAATTGAAATCGTTCGAAGGTTCAATATCCAAGTCAACAATTTGACTCAATTCTTGCCACAAGACAGGGTCTCTGAATTTGCTAAGTTAACTCCTGTGCAACTTCTAGAAGAAACAGAAAAGGCTGTTGGTGATCCTCAACTACCAGTCCAACATTGTGCTCTTGTTCTTAAAAGTAGAGAACTGAAGAAACTTGAAAAAGCTGTCGAGCAGAATGGGGAAATGTTGAATTGTTTGAAGACACTTAATTCTGAACGAGAAAAAGATGTTGAGCGTGTCCGTCAAAGACAAGAACTTCTAGCAAAGGTTGAATCCATGAAAAAGAAACTGCCATGGTTGAAGTACGATATGCAGAAGGTCCGATATATGGAAGCTAAAGAGCAGGAGAATGATGCAAAAAAGAAGTTGGATGAAGCTGCTAAGACTTTGAATGATATCAGAGAACCTATAGAGAAACAGAGGCAGGAGAAAGCAGCACTAGATGCTAAATGCAAAAAAGTTAGTGGGCTCATGAATGGCAATTCTAAGAGGCGCATGGAACTTCTAGAGAAGGAAAATCGTTTGGGAGTGCAAGCACGAGGAAAATACAATGAAATGGAAGAGTTGAGGAGGCAAGAAGAATCACGTCAACAAAGAATTTCAAAAGCTAAGGAAGATCTTGTTGCTGCTGAACTAGAACTTGCTAGCCTGCCTCCCTATGAACATCCTAAAGATGAAATTGAAAGATTAGGATCTCAAATTCTTGAGCTAGAATTCTCTGCAAGTCAAAAAAGGCTCGTAAAGTCAGAAAAGGAAAAACTCTTAGGTCAGAAGAAAGGAGCCCTGAGGCAGTGTGTAGATAGGTTGAAGGATATGGAAAATAAAAATAATAAACTGTTACAGGCATTGCAAAATTCCGGAGCTGAAAAGATATTTGAAGCTTATCACTGGTTGCAGGAACATCGCCATGAGTTGAATAAGGACGTGTATGGTCCTGTGTTGCTTGAGGTTAATGTGTCACATCGGATTCATGCAGACTATTTGGAAGGTCATATCCCTTATTATATTTGGAAGTCCTTCATAACTCAGGATCCTGATGACCGGGATTTCTTAGTAAAAAACTTGAGGTTATTTGATGTTCCTGTCTTAAATTATGTGCGGAATGAAGATCGTCATAAAGAACCCTTTCAAATATCTGAGGAGATGCGCAAACTTGGCATCTCCTCCCGGCTTGACCAAGTGTTTGATTCTCCTGATGCTGTCAAGGAGGTTTTGACTAGCCAATTTGCTCTGGAACATTCGTATATTGGATCCAGGGAAACTGATCAGAAGGCTGATGAGGTTTCGAAATTAGGAATTTTGGATTTTTGGACTCCAGAAAATCACTACAGATGGTCTGTTTCTAGATATGGTGGTCATGTTTCAGCAATTGTTGAACCGGTGGCTCGCTCACGTCTTCTTGTCTGTAGTACGGATACTGGGGAAATTGAAAGGCTGAGGTCCAAGAAAAAGGAGCTTGAAGAGATCATTGATGATTTAGAGGAAAATTTCAAATCACTTCAGATAGAACAAAGACTTTTAGAGGATGAAGCAGCTAAACTTCATAAGCAGCGGGAGGAGATTATCAATACTGTACAACTTGAGAAGAGAAAGCGTCGTGAAATGGAAAACCGAGTTAGTCAAAGAAAACGGAAATTAGAGTCTATGGAGAAGGAGGATGACTTGGATACAGTTATGGCAAAGCTCATTGACCAAGCTGCAAAATTTAACATTCAACGGTACCAATGTGTAATTGAAATTAAGAATTTACTCATTGAGTCAGTTTCCTACAAACGAACTTTCGCTGAAAAGCATATGACCTCCATTGAATTTGATGCAAAGATTAGAGAATTGGAAGTTGGTATCAAGCAGCAAGAAAGGTTTGCTATGCAAGCATCCTTGCACTTTGAGAATTGTAAGAAGGAAGTGGAGGATCATCGACAGCAACTGGCAGCTGCCAAGAGGCATGCAGAATCAATTGCCGTGATCACTCCAGTACTTGAGAAAGCATTCCTTGAGATGCCAGCTACAATAGAAGATTTGGAGGCTGCTATTCAAGATACTATCTCTCAAGCCAATTCTATTCTTTTTCTAAACCACAACATTTTGGAAGAATATGAAGAGTGTCAACAAAAGATAGAAGCCATTTCTACAAAACTGGAAGCAGATGAAAAGGAACTGAGGATGTATTTGGCAGAAATAGATGCCCTGAAGGAAAATTGGCTTACCACATTGAGAAACCTTGTTGCTCAAATAAATGAGACCTTTAGTCGAAACTTCCAAGATATGGCTGTTGCTGGAGAAGTTTCATTGGATGAGCATGATATCGATTTTGATCAATTTGGGATACTTATAAAAGTCAAGTTCAGGCAAGCAGGAGAACTTCAAGTTCTTAGCGCCCACCATCAATCTGGAGGGGAGCGCTCAGTTGCAACTATTCTGTATCTTGTTTCTCTACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGGAATGGACCCAATAAATGAAAGAAAGATGTTCCAGCAACTAGTGAGAGCTGCAAGCCAACCTAATACACCACAATGTTTCTTACTTACACCAAAGTTGCTACCGGATCTAGAATACAGTGAGGCTTGTAGCATTCTGAATATAATGAATGGGCCATGGATTGAGCAGCCTTCAAAAGTGTGGAGCAATGGAGATTGCTGGGGAACTGTCGTTGGTTTATTAGGAAAAAGCCAATGCTAA 3156 40.72 MAERRSKRPKITRGEDDYLPGNITEIELHNFMTFNDLKCKPGSRLNLVIGPNGSGKSSLVCAIALGLGGDPQLLGRASSIGAYVKRGEESGYIKISLRGDTEEEQITIMRKIDTRNKSEWLFNGKVVPKKDVIEIVRRFNIQVNNLTQFLPQDRVSEFAKLTPVQLLEETEKAVGDPQLPVQHCALVLKSRELKKLEKAVEQNGEMLNCLKTLNSEREKDVERVRQRQELLAKVESMKKKLPWLKYDMQKVRYMEAKEQENDAKKKLDEAAKTLNDIREPIEKQRQEKAALDAKCKKVSGLMNGNSKRRMELLEKENRLGVQARGKYNEMEELRRQEESRQQRISKAKEDLVAAELELASLPPYEHPKDEIERLGSQILELEFSASQKRLVKSEKEKLLGQKKGALRQCVDRLKDMENKNNKLLQALQNSGAEKIFEAYHWLQEHRHELNKDVYGPVLLEVNVSHRIHADYLEGHIPYYIWKSFITQDPDDRDFLVKNLRLFDVPVLNYVRNEDRHKEPFQISEEMRKLGISSRLDQVFDSPDAVKEVLTSQFALEHSYIGSRETDQKADEVSKLGILDFWTPENHYRWSVSRYGGHVSAIVEPVARSRLLVCSTDTGEIERLRSKKKELEEIIDDLEENFKSLQIEQRLLEDEAAKLHKQREEIINTVQLEKRKRREMENRVSQRKRKLESMEKEDDLDTVMAKLIDQAAKFNIQRYQCVIEIKNLLIESVSYKRTFAEKHMTSIEFDAKIRELEVGIKQQERFAMQASLHFENCKKEVEDHRQQLAAAKRHAESIAVITPVLEKAFLEMPATIEDLEAAIQDTISQANSILFLNHNILEEYEECQQKIEAISTKLEADEKELRMYLAEIDALKENWLTTLRNLVAQINETFSRNFQDMAVAGEVSLDEHDIDFDQFGILIKVKFRQAGELQVLSAHHQSGGERSVATILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSILNIMNGPWIEQPSKVWSNGDCWGTVVGLLGKSQC* 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 21632040 21686570 - Vvi13g1074 Vvi13g1074 774860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1074 1051 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 17 1049 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Vvi13g1074 1051 Gene3D - 22 211 IPR027417 -
Vvi13g1074 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 994 IPR027417 -
Vvi13g1074 1051 Coils Coil 773 793 - -
Vvi13g1074 1051 Coils Coil 836 877 - -
Vvi13g1074 1051 Gene3D - 847 1014 IPR027417 -
Vvi13g1074 1051 Coils Coil 406 433 - -
Vvi13g1074 1051 Coils Coil 620 696 - -
Vvi13g1074 1051 Coils Coil 253 277 - -
Vvi13g1074 1051 Coils Coil 330 350 - -
Vvi13g1074 1051 Pfam RecF/RecN/SMC N terminal domain 23 991 IPR003395 -
Vvi13g1074 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 1002 IPR027417 -
Vvi13g1074 1051 CDD ABC_SMC5_euk 924 1026 - -
Vvi13g1074 1051 CDD ABC_SMC5_euk 21 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1074 K22803 SMC5; structural maintenance of chromosomes protein 5 - vvi:100249983 2032.3
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1074 . . . . . . . . . Cmo17g00945 . . . . Sed07g0592 . Cpe12g00841 Bhi09g00709 Tan06g0629 Cmetu01g0859 . Hepe03g1771 . . . . . . . . . . Cone20ag1052 . . Lsi02g02546 . . . . . . . . . . . . . . . Cma17g00970 . Car17g00928 . . . . . . . . . Cla09g00408 Cam09g0435 Cec09g0438 Cco09g0425 Clacu09g0440 . Cre09g0421 . . Chy01g01830 Cme01g02432
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi13g1074 . 1 1042 Structural Maintenance of Chromosomes family AT5G15920 69.5 0.0e+00 1380.2
Vvi16g271 . 1 1028 Structural Maintenance of Chromosomes family AT5G07660 62.5 0.0e+00 1211.1
Vvi16g371 . 28 160 Structural Maintenance of Chromosomes family AT5G07660 59.7 9.9e-37 152.9
Vvi16g271 . 1 1028 Structural Maintenance of Chromosomes family AT5G61460 64.7 0.0e+00 1243.4
Vvi16g371 . 28 160 Structural Maintenance of Chromosomes family AT5G61460 63.4 1.4e-38 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32