Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g111 ATGAAGAAATATGTTTACAATTTTTTATTATTTAATGACACGCCGACACTTCATATCATACAGCGCCACAACATAATACTTTACTTCCCCACTGCATGTGCCGTACTTTCTCGGTGGGTAAACACCGATCCCAATTTTCTCTCCGTCCAAACGCCCCTTCTATTTTCCATATCATTTCCCTCCGTCAAAACCCTCTTCCTAAATTTAGGAGAACCTCCCCAAAATCCCCTTTTCCCACGAACCTCATCTGATTTCACCCTCGTCTTCCGTCACCCACCTATGGCGTCTCCTCCAACTCTCCCAATCTCTAGTTCCCAATCTACCGGTGTCGCCGCCGGTCAGTCGCAGCAGCCGCCTATAGCGACGCCGGCGTTCCGAGCATTCATGTCGCGTCTATCCGCCTCGATCCGCCACGGCTTCTCTCAGCGCCGGCCGTGGTTGGAGCTCGTCGACCGTAGCTCCATGGCCCGACCTGATAATCTTTCCGATGCTGCATCTCGGATTCGGAGGAATTTCTCGTACTTTCGCGTCAACTACCTAACCCTACTCGCGCTGGTATTGGCTTTCTCTCTCCTCTCTCACCCTTTCTCTCTCCTCGTCCTCCTCTGCCTCCTCGCGGCGTGGCTCTTCCTCTACCTTTTCCGGCCCTCGGATCAGCCCTTGGTCCTCCTTGGCCGTACGTTTTCGGATCGCGAAACCCTAGGCATCTTGGTGGTGTTAACCATCGTGGTGGTGTTCCTCACCAGCGTTGGATCACTGCTGATCTCAGCATTGATGATTGGATTGGCCATTGTTTGCGCGCATGGTGCGTTTAGGATGCCGGAGGATCTGTTCCTTGATGATCAGGAGCCCGCCGCCTCCGGATTCCTCTCCTTCCTCGGCGGAGCGGCATCTTCCGCCGCCGCGGCTGCCGCTCCGGCCTTCTTAATGGTTATGGATAAGGAAACGGAGATTTTCAAAGGCTTTTACGCATACCCTTTTTGGGTTTTTCAGTTTTTCAGTGGGAGAGTGGTGGGTTGGAGACACATTTGTGATAAAAAGAAGGAGAAATGGAAAAAATTTCAGCTCAAGAGTGAGGCTTCTGGGCATTATGCTCGCTTTCTACTGTTTGTTCAGTTGATTATCTTGGTGGTCCAGCCTGTTTCAAGCCAGGCATGGGATGGAGTCATTGTCACAGAAGCTGATTTCCAATCGCTTCAGGCCTTCAAGCATGAACTGGTGGATCCAAGAGGGTTCTTGAGGAGCTGGAACGACAGTGGATATGGAGCTTGTTCGGGTGGTTGGGTTGGGATCAAGTGTGCTCAGGGACAGGTCATTGTTATTCAGCTTCCATGGAAAGGATTGGGAGGTCGAATCTCAGAGAAGATTGGGCAGCTACAAGCGCTACGAAAACTGAGTCTCCATGATAATTTCATTGGTGGTTCCATACCTTCAGCTCTGGGGTTTCTCCCAAACCTCAGAGGAGTTCAGCTCTTCAATAATAGGTTTTCGGGTTCTATTCCTCCTTCAATTGGCTCCTGTCCCTTGCTTCAAACTGTTGATCTCAGTAACAATTCTCTCTCTGGGACTATCCCTGATAGTCTTTTCAACTCTACCAAGTTTTACAGGCTCAATCTCAGCTTCAATTCCTTTTCGGGTTCCATCCCTGTTAGTCTCACTCGCTCTTCTTCCCTCACCTTCCTTGCTCTCCAACACAATAACCTCTCTGGCCCTATACCCAACTCTTGGGGTTTGAGTGAGCTCCAAAAGGTTTCTCTCAGTCATAACCAGATCACTGGAGCCATACCTGATGAAATAGGTCGGCTCTCCAGGCTTAAAACAGTAGATTTCTCCAGCAATGCCATTAATGGAAGCTTGCCCATTAGTCTCTCCAATTTATCCTCTCTTCTTCTTGATTTATCGCAGAATAACCTTACCGGAGATATCCCATCTTCCATTGCTGATCTTCCAAACCTGAATTCCTTCAATGTTTCTTACAACAACCTCTCTGGTTCTGTTCCAGCTCTTCTGTCCCAAAAGTTCAATTCAAGCTGCTTTGTGGGGAATCTTCAGCTCTGTGGGTACGATGCTTCAACCCCTTGCCCTTCTGAAGTACCTTCTCAAGTTGTCCCAGCTCCATCTCGGGGAAAACCGAGGAGCCATGGCAGAAAACTAAGTACCAAGGACATAATTCTCATAGCAGCAGGGGCACTGCTCATAATCTTGCTTCTAGCAGGAGGCAAACTAGTCCATTTTGATGGGCCAATGGTGTTCACAGCCGACGATCTTTTGTGTGCAACCGCAGAGATTATGGGAAAGAGCACTTATGGGACTGTTTACAAGGCCACATTGGAGGATGGAAACGAAGTTGCAGTGAAGAGATTGAGGGAGAAGATCACAAAAAGCCAGAGGGAATTCGAAACTGAGGTTAATGTACTTGGGAAAATTCGACACCCTAATCTTCTGGCTCTCAGGGCTTACTACTTAGGACCCAAAGGGGAGAAACTTCTTGTTTTCGACTACATGCCGAAAGGGAGCCTCGCAGCTTTCCTCCATGCCCGCGGCCCGGACATATCGATTGATTGGCCAACAAGGATGAGAATCGCACAAGGAACTACGCGCGCCAATTCTAATGTGATTGCAACAGCAGGGGCATTGGGTTACCGGGCACCGGAGCTCTCGAAGCTGAAGAAAGCCAGCACAAAGACTGATGTATACAGTCTCGGGGTTATTATCCTGGAGCTTCTAACAGGGAAGTCGCCAGGGGAGGCGACGAATGGAGTGGATTTGCCTCAGTGGGTGGCCTCCATTGTGAAGGAGGAGTGGACAAATGAAGTGTTCGATTTGGAGTTGATGAAGGATGCGTCTACGATTGGTGATGAGTTGCTGAACACTTTGAAACTGGCTTTGCATTGTGTGGATCCTTCACCCTCAGCACGGCCGGAAGTCCACCAGGTTCTCCAGCAGCTTGAGGAGATCAGACCGGAGGCAGCTGCTAGTTCCGGTGAGGATGGAGCCGGAGCCTTCCATAAAGCCTGCATATTCCATGAACTCATTCCCAATTTCTCCCTTTGTTCCTCTCAATTTCCCACTCCAAAAGCCCAGCCGCAGCAACAGCCACAAGCACAACCTCCGGCCCCAACTCATTATCATCTTACAGGACGAATCAAATGA 3153 49.64 MKKYVYNFLLFNDTPTLHIIQRHNIILYFPTACAVLSRWVNTDPNFLSVQTPLLFSISFPSVKTLFLNLGEPPQNPLFPRTSSDFTLVFRHPPMASPPTLPISSSQSTGVAAGQSQQPPIATPAFRAFMSRLSASIRHGFSQRRPWLELVDRSSMARPDNLSDAASRIRRNFSYFRVNYLTLLALVLAFSLLSHPFSLLVLLCLLAAWLFLYLFRPSDQPLVLLGRTFSDRETLGILVVLTIVVVFLTSVGSLLISALMIGLAIVCAHGAFRMPEDLFLDDQEPAASGFLSFLGGAASSAAAAAAPAFLMVMDKETEIFKGFYAYPFWVFQFFSGRVVGWRHICDKKKEKWKKFQLKSEASGHYARFLLFVQLIILVVQPVSSQAWDGVIVTEADFQSLQAFKHELVDPRGFLRSWNDSGYGACSGGWVGIKCAQGQVIVIQLPWKGLGGRISEKIGQLQALRKLSLHDNFIGGSIPSALGFLPNLRGVQLFNNRFSGSIPPSIGSCPLLQTVDLSNNSLSGTIPDSLFNSTKFYRLNLSFNSFSGSIPVSLTRSSSLTFLALQHNNLSGPIPNSWGLSELQKVSLSHNQITGAIPDEIGRLSRLKTVDFSSNAINGSLPISLSNLSSLLLDLSQNNLTGDIPSSIADLPNLNSFNVSYNNLSGSVPALLSQKFNSSCFVGNLQLCGYDASTPCPSEVPSQVVPAPSRGKPRSHGRKLSTKDIILIAAGALLIILLLAGGKLVHFDGPMVFTADDLLCATAEIMGKSTYGTVYKATLEDGNEVAVKRLREKITKSQREFETEVNVLGKIRHPNLLALRAYYLGPKGEKLLVFDYMPKGSLAAFLHARGPDISIDWPTRMRIAQGTTRANSNVIATAGALGYRAPELSKLKKASTKTDVYSLGVIILELLTGKSPGEATNGVDLPQWVASIVKEEWTNEVFDLELMKDASTIGDELLNTLKLALHCVDPSPSARPEVHQVLQQLEEIRPEAAASSGEDGAGAFHKACIFHELIPNFSLCSSQFPTPKAQPQQQPQAQPPAPTHYHLTGRIK* 1051
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1138150 1148273 - Vvi13g111 Vvi13g111 773897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g111 1050 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 631 737 - -
Vvi13g111 1050 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 325 577 - -
Vvi13g111 1050 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 738 867 - -
Vvi13g111 1050 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 868 994 - -
Vvi13g111 1050 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 578 630 - -
Vvi13g111 1050 Gene3D Transferase(Phosphotransferase) domain 1 752 868 - -
Vvi13g111 1050 Gene3D Ribonuclease Inhibitor 391 693 IPR032675 -
Vvi13g111 1050 MobiDBLite consensus disorder prediction 1022 1050 - -
Vvi13g111 1050 SMART LRR_typ_2 507 531 IPR003591 -
Vvi13g111 1050 SMART LRR_typ_2 649 672 IPR003591 -
Vvi13g111 1050 SMART LRR_typ_2 459 483 IPR003591 -
Vvi13g111 1050 SMART LRR_typ_2 578 602 IPR003591 -
Vvi13g111 1050 Pfam PRA1 family protein 140 281 IPR004895 -
Vvi13g111 1050 SUPERFAMILY L domain-like 393 685 - -
Vvi13g111 1050 Pfam Protein kinase domain 872 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g111 1050 Gene3D Transferase(Phosphotransferase) domain 1 869 1001 - -
Vvi13g111 1050 SUPERFAMILY Protein kinase-like (PK-like) 762 987 IPR011009 -
Vvi13g111 1050 ProSiteProfiles Protein kinase domain profile. 758 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g111 1050 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 631 737 - -
Vvi13g111 1050 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 868 994 - -
Vvi13g111 1050 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 578 630 - -
Vvi13g111 1050 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 738 867 - -
Vvi13g111 1050 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 325 577 - -
Vvi13g111 1050 Pfam Leucine rich repeat 580 638 IPR001611 GO:0005515
Vvi13g111 1050 Pfam Protein tyrosine and serine/threonine kinase 761 859 IPR001245 GO:0004672|GO:0006468
Vvi13g111 1050 Pfam Leucine rich repeat N-terminal domain 394 433 IPR013210 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g325 Vvi13g111 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76154 PF03208 PRA1 7.10E-46 No_clan Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g111 - - vvi:100246700 1147.5