Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1144 ATGGTATGGTTATTTTTGGCAAAATCCGAGGTCAATTTTGTTGCAGAGACACCATGGATTGCCACCAACGGCCATGATTTCCTTCCAAACTCCTACCTTTTAGGGTTTATTCCTCTGCTCTCATCCCACATTAGATTTGGGGCTAGGGGATTTTTGTTTTCTTGGTGGAAAAGAATAATGCCGACTAAACCCAAAATTGAGGATCGGCGGATAGAACCTGGTGGTAAGAGCAATCCGTCATCAACAGTCTACTCCCAACCTTGGTGGCATGGTGTTGGGAACAATGCCATCTCCCCAGCTGCCTTGGGTGGAAGCCCATCAAAATCAACTTCAGTTGAACACCTTAACAGTCATATCACGAGCAATGGTTTCCAATTACAAGCTAATGGCAGGCTGGATGATGGAACTACCTTTAATAAAGGAACACAACCTACGGTAGCCCTGCAATCTGATGGAAGGAATGGACAGGAACACCAGCACCTCAATCCTACTGCTTCCTCAACACTGCCAATTATGAGTGAACATCTTGAACCAAATTCCCAAATGGAACTTGTTGGTCACTCAATTGTGTTGACATCATATCCGTATCAAGATCCACATAATGTGGGGATTATGACTTCTTATGGGCCACAGGCTATGGTGCATCCACATTTGTTTGGAATGCATCAGCCCAGAATGCCTTTGCCATTAGAGATGGAAGAGGAGCCTGTTTATGTGAATGCAAAGCAGTATCATGGGATTCTTAGACGGAGACAGTCACGTGCTAAGGCTGAGCTTGAAAAGAAAGCTATCAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCACCAACATGCAATGAGAAGGGCAAGGGGTTGTGGAGGCCGTTTTCTCAACACTAAGAAGCTTGATAACAATGATGCCAATACAACAGCAGAAAAAGGTTCAGTCTCTGGTGCGGCCCTTTCTACACAATCTGCCAGTTCATCAGGCTCCGAACACCTGCCTACCAACTCTAGTCGAAATTTGGATTCCTCCAGTGTGCAGCAAGAAGAGAAAGGACGCACAATTCAAGATATGCTTGAAGCACACACTTACTCCAATGGCAACAGGAATGGCCATGGTCTATCATCAGCATACCATTCATCAAATGGCAGTGAGGGAGGTGACTGCTTTGGCCAACCAAGGGAAAACATGCAGCTGAACACGGCCCCTCATAGGGCTCTACCCATCAAATAA 1218 45.48 MVWLFLAKSEVNFVAETPWIATNGHDFLPNSYLLGFIPLLSSHIRFGARGFLFSWWKRIMPTKPKIEDRRIEPGGKSNPSSTVYSQPWWHGVGNNAISPAALGGSPSKSTSVEHLNSHITSNGFQLQANGRLDDGTTFNKGTQPTVALQSDGRNGQEHQHLNPTASSTLPIMSEHLEPNSQMELVGHSIVLTSYPYQDPHNVGIMTSYGPQAMVHPHLFGMHQPRMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKAIKVRKPYLHESRHQHAMRRARGCGGRFLNTKKLDNNDANTTAEKGSVSGAALSTQSASSSGSEHLPTNSSRNLDSSSVQQEEKGRTIQDMLEAHTYSNGNRNGHGLSSAYHSSNGSEGGDCFGQPRENMQLNTAPHRALPIK* 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 22697956 22706910 - Vvi13g1144 Vvi13g1144 774930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1144 405 PANTHER TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED 88 400 - -
Vvi13g1144 405 Gene3D - 233 294 - -
Vvi13g1144 405 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 88 400 IPR001289 GO:0003700|GO:0006355
Vvi13g1144 405 MobiDBLite consensus disorder prediction 354 382 - -
Vvi13g1144 405 ProSitePatterns NF-YA/HAP2 subunit signature. 238 258 IPR018362 GO:0003677|GO:0016602
Vvi13g1144 405 SMART cbf3 232 293 IPR001289 GO:0003700|GO:0006355
Vvi13g1144 405 MobiDBLite consensus disorder prediction 295 347 - -
Vvi13g1144 405 ProSiteProfiles NF-YA/HAP2 family profile. 233 293 IPR001289 GO:0003700|GO:0006355
Vvi13g1144 405 PRINTS CCAAT-binding transcription factor subunit B signature 236 258 IPR001289 GO:0003700|GO:0006355
Vvi13g1144 405 PRINTS CCAAT-binding transcription factor subunit B signature 267 290 IPR001289 GO:0003700|GO:0006355
Vvi13g1144 405 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 235 290 IPR001289 GO:0003700|GO:0006355
Vvi13g1144 405 MobiDBLite consensus disorder prediction 272 405 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g1419 Vvi13g1144 ECH
Vvi6g216 Vvi13g1144 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13847 PF02045 CBFB_NFYA 2.90E-26 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1144 K08064 - vvi:100248239 696.812