Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1147 ATGGACTCTGAAGGAGAATCTGGGGCCAAGTCCTTGAAGGGCCTGGGTGGTCAGGTTTGCCAGATCTGTGGTGATAATGTTGGCAAGACTGTAGATGGTGAACCCTTTATTGCTTGCGATGTTTGTGCATTTCCTGTATGCAGGCCCTGCTACGAGTATGAGAGGAAAGACGGGAATCAGTCTTGCCCTCAATGCAAAACCAGATACAAGAGGCATAAAGGAAGCCCTGCTATTCGTGGTGACGGAGAAGAGGATGGTGACGTTGATGATGTTGTCGCTGATATCAACTACTCTTCGGAAGATCAAAACCAGAAGCAGAAGATAGCTGAGCGCATGTTGAGCTGGCAAATGACATATGGACGAGGGGAGGATACAAACTACGATAGAGAGGTTTCTCACAATCACATTCCCTTGCTCACAAATGGAATGGATGTTTCAGGAGAGCTGTCTGCTGCTTCACCCGAGCGTCTTTCTATGGCATCTCCTGGAGCTGGTGGAGGAGGGAAACGTATACACCCCCTCCCATACACAGGAGATGTCAATCAATCACCTAATATTAGAATCACGGATCCAGTGAGGGAGTTTGGTTCACCAGGATTAGGCAATGTAGCCTGGAAAGAGAGGGTTGATGGCTGGAAGATGAAGCAGGAGAAGAATGTTGTTCCACTGAGCACTGGCCATGCCGCTTCTGAAGGCAGAGGAGCTGGAGATATTGATGCAAGCACTGATGTGCTTGTGGATGACTCTCTCCTAAATGATGAAGCTCGGCAGCCTCTCTCAAGGAAGGTTTCTATTCCATCATCTAGGATAAATCCTTACAGGATGGTCATTATTCTGCGGCTGATTATTCTCTCAATTTTCTTGCACTACCGGATAACAAATCCTGTGAATGATGCATATCCTCTGTGGCTGCTATCTGTGATATGTGAGATTTGGTTTGCAATGTCCTGGATATTGGATCAGTTCCCAAAATGGCTCCCAGTAAACCGTGAAACATATCTTGACAGGCTCGCTCTAAGATATGACCGAGAAGGAGAGCCCTCACAGTTAGCTGCTGTTGACATATTTGTCAGTACTGTGGACCCTTTAAAGGAGCCACCTCTTGTAACAGCAAATACCGTCTTGTCCATTCTTGCGGTTGACTACCCAGTTGACAAGGTTTCTTGTTATGTCTCTGACGATGGAGCGGCTATGTTGACATTTGAAGCTTTATCTGAAACATCAGAATTTGCACGAAAATGGGTTCCTTTCTGCAAAAAGTATAGCATTGAGCCACGGGCCCCAGAATGGTACTTTGCACTGAAGATTGACTACCTGAAGGATAAAGTTCAGCCATCATTTGTCAAAGACCGCAGGGCTATGAAAAGAGAGTATGAAGAATTTAAGGTTCGTGTCAATGGGCTCGTTGCAAAAGCACAAAAGATTCCTGAAGAAGGATGGATCATGCAGGATGGTACACCATGGCCTGGAAATAATACCAGGGATCATCCAGGAATGATCCAGGTTTTCTTAGGTCAAAGTGGAGGGCTCGATACCGAGGGTAATGAGCTGCCTCGGTTAGTCTATGTTTCTCGTGAAAAGCGTCCTGGCTTCCAACATCACAAGAAAGCCGGTGCTATGAATGCACTTGTTCGAGTATCAGCTGTTCTAACTAATGGACCCTTCTTGTTGAATCTTGATTGTGATCACTACATAAACAACAGCAAGGCATTGAGGGAAGCTATGTGTTTTTTGATGGATCCAAACCTTGGGAAATCAGTTTGTTATGTTCAGTTTCCACAGAGGTTTGATGGTATTGATAGAAATGATCGATATGCCAACCGTAATACTGTTTTCTTTGATATAAACTTGAGAGGTTTGGATGGTATTCAAGGCCCTGTTTATGTGGGAACTGGATGCGTCTTCAATAGAACTGCTTTATATGGTTATGAGCCCCCTATCAAACCTAAGCATAAAAAACCAGGGGTGTTTTCTTTATGCTGTGGTGGATCAAGAAAGAAGGGTTCAAAATCCAGTAAGAAGGGCTCAGACAAGAAGAAATCTAGCAAGCATGTAGACCCCACTGTGCCAATTTTCAATCTAGAGGATATAGAGGAGGGTGTTGAAGGTGCTGGATTTGATGATGAGAAGTCACTGTTAATGTCACAAATGAGCCTGGAAAAAAGGTTTGGTCAGTCTGCTGTTTTTGTTGCCTCTACACTTATGGAGAATGGTGGTGTCCCTCAATCTGCAGCCCCAGAAACACTTCTTAAAGAGGCCATTCATGTTATCAGCTGTGGATACGAGGATAAATCAGAATGGGGACGTGAGATAGGATGGATATATGGGTCTGTCACGGAAGATATTCTTACAGGATTCAAGATGCATGCTCGTGGTTGGAGATCTATTTACTGCATGCCCAAGCGCCCGGCCTTCAAAGGGTCTGCCCCTATTAATCTTTCAGATCGTCTGAACCAAGTGCTTCGATGGGCCCTGGGTTCTGTGGAAATTCTTTTCAGTCGGCACTGTCCTATCTGGTATGGTTATGGTGGAAGGCTAAAATGGCTTGAGAGATTCGCATATGTAAACACCACCATTTATCCAATCACTGCCATCCCTCTTCTTGTTTACTGCACTCTGCCAGCTGTTTGTTTGCTTACTGGAAAGTTCATTATTCCACAGATCAGTAACATTGCAAGTATTTGGTTTATATCCCTCTTCCTTTCCATCTTTGCTACCGGTATATTGGAGATGAGATGGAGTGGTGTTGGAATCGATGAATGGCCTGCTGAAAGTACTTGCTGGAATTGA 2790 44.77 MDSEGESGAKSLKGLGGQVCQICGDNVGKTVDGEPFIACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPAIRGDGEEDGDVDDVVADINYSSEDQNQKQKIAERMLSWQMTYGRGEDTNYDREVSHNHIPLLTNGMDVSGELSAASPERLSMASPGAGGGGKRIHPLPYTGDVNQSPNIRITDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPLSTGHAASEGRGAGDIDASTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRMVIILRLIILSIFLHYRITNPVNDAYPLWLLSVICEIWFAMSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYSIEPRAPEWYFALKIDYLKDKVQPSFVKDRRAMKREYEEFKVRVNGLVAKAQKIPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGQSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKPGVFSLCCGGSRKKGSKSSKKGSDKKKSSKHVDPTVPIFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSAAPETLLKEAIHVISCGYEDKSEWGREIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPITAIPLLVYCTLPAVCLLTGKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWPAESTCWN* 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 22748091 22756748 + Vvi13g1147 Vvi13g1147 774933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1147 929 PANTHER CELLULOSE SYNTHASE 6 928 - -
Vvi13g1147 929 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 6 928 - -
Vvi13g1147 929 Pfam Zinc-binding RING-finger 10 86 IPR027934 -
Vvi13g1147 929 Pfam Cellulose synthase 353 928 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vvi13g1147 929 SUPERFAMILY Nucleotide-diphospho-sugar transferases 367 897 IPR029044 -
Vvi13g1147 929 MobiDBLite consensus disorder prediction 664 686 - -
Vvi13g1147 929 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 492 644 IPR029044 -
Vvi13g1147 929 CDD mRING-HC-C4C4_CesA_plant 18 68 - -
Vvi13g1147 929 SUPERFAMILY RING/U-box 5 86 - -
Vvi13g1147 929 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 94 IPR013083 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1147 K10999 - vvi:100256811 1851.64