Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1150 ATGAATCATCTAACTGTTGAAACTGAAGATTCTTTTTCCAGTTTACATGAGCTTGCTGCCAACAATGATGTTGATGGCTTTAAGCGATCTTTAGAGCGCGATGCTTCTGCAATCAACGAGGTTGGCCTCTGGTATGGCCGGCAGAAGGGGTCAAAACAAATGGTTCTCAAGCATAGAACTCCGATGATGGTGGCTGCTACCTATGGTAGTGTTGAGGTTCTGAAGCTGATACTATCACGATCTGATGCTGATGTGAATATCTCATGTGGACCAGACAAAAGCACTGCTCTTCATTGTGCTGCATCTGGTGGATCTCGCAATTTGCGGATCTCCATCACTAAGAAGAAAGAATACCCAATTGATCCATCTCTTCCGGATATCAAGAACAGCATTTATGCAACAGATGAGTTCCGAATGTTTTCTTTCAAGGTCCGCCCTTGTTCCCGTGCTTATTCCCATGATTGGACTGAGTGCCCCTTTGTTCACCCTGGGGAAAATGCTCGAAGGAGAGACCCTCGGAAGTTCCACTACAGCTGTGTGCCTTGCCCTGATTTCCGAAAGGGGGCTTGTAGACGAGGAGATTTATGTGAATATGCCCATGGAGTTTTTGAGTGCTGGCTCCACCCTGCACAGTACCGAACTCGGCTCTGCAAGGATGGCACGAACTGTGCAAGACGGGTCTGCTTTTTTGCACACACATCCGAGGAGCTTCGGCCCTTGTACTTATCGACTGGTTCTGCCGTCCCTTCTCCTCGTGCATCTGGACCTGCTAATGCAATGGATATGGCAGCTGCTTTGAGCCTTTTACCTGGCTCTCCATCATCACTTGGCCTCAGCCTAATGTTCCTACCCTTAACCTTCCTGGAAGCAACTTTCAGTCCACCAAGGACCAATGCTGCTTCCTTGAGCCGTTCTGCTCGTTCTAAAACACTGACTCCTTCAAACCTCGAAGAGCTATTTTCTGCTGAGATCTCGTCATCTCCCCGTTACTCTGACTCTTCTGCAGTTTTCTCCCCATCACACAAGTCAGCTATTCTCAATCAATTCCAACAGCAGCAACAGAGTATGCTAATGTCACCTAGAAGCATGGAGCCCATCTCCCCAATGGGCCCAAGGCTTTCTGCGATTGCTCAGCGTGAGAAGCAGCACCAGCAGCTGCGGAGCCTTAGCTCCCGTGACCTTGGATCCAACAACCCTGCCTCTGTTGTTGGGTCCCCTGTGAATTCTTGGTCGAAGTGGGGTTCCCCAACTGGGAAATTAGATTGGTCAGTTAATGGGGATGAAATGGGTCGCCTGAAAAGGTCATCGTCATTCGAGCTTGGAAACAATGGTGAGGAGCCGGACCTGTCATGGGTCCATTCTTTAGTCAAGGAATCTCCACCTGAGATGATGAAAGAGAAGTTTGCAGCCCCGGTGTCTGCTTCTGCATCGTCCGGTGAGGGTTTGAATTCTAACTCTCAAATTGAATCCAATTCTAATTCTCAAATTGATTCTGTTGATCATTCCGTTATTGGAGCTTGGCTCGAGCAGATGCAGCTTGATCAGCTTGTAGTCTAG 1557 48.49 MNHLTVETEDSFSSLHELAANNDVDGFKRSLERDASAINEVGLWYGRQKGSKQMVLKHRTPMMVAATYGSVEVLKLILSRSDADVNISCGPDKSTALHCAASGGSRNLRISITKKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDLCEYAHGVFECWLHPAQYRTRLCKDGTNCARRVCFFAHTSEELRPLYLSTGSAVPSPRASGPANAMDMAAALSLLPGSPSSLGLSLMFLPLTFLEATFSPPRTNAASLSRSARSKTLTPSNLEELFSAEISSSPRYSDSSAVFSPSHKSAILNQFQQQQQSMLMSPRSMEPISPMGPRLSAIAQREKQHQQLRSLSSRDLGSNNPASVVGSPVNSWSKWGSPTGKLDWSVNGDEMGRLKRSSSFELGNNGEEPDLSWVHSLVKESPPEMMKEKFAAPVSASASSGEGLNSNSQIESNSNSQIDSVDHSVIGAWLEQMQLDQLVV* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 22774848 22779261 + Vvi13g1150 Vvi13g1150 774936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1150 518 MobiDBLite consensus disorder prediction 378 409 - -
Vvi13g1150 518 MobiDBLite consensus disorder prediction 468 495 - -
Vvi13g1150 518 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 181 201 IPR000571 GO:0046872
Vvi13g1150 518 PANTHER UNKEMPT FAMILY MEMBER 291 357 IPR045234 -
Vvi13g1150 518 PANTHER UNKEMPT FAMILY MEMBER 111 277 IPR045234 -
Vvi13g1150 518 PANTHER UNKEMPT FAMILY MEMBER 356 517 IPR045234 -
Vvi13g1150 518 PANTHER UNKEMPT FAMILY MEMBER 1 107 IPR045234 -
Vvi13g1150 518 SMART c3hfinal6 211 234 IPR000571 GO:0046872
Vvi13g1150 518 SMART c3hfinal6 176 202 IPR000571 GO:0046872
Vvi13g1150 518 SMART ANK_2a 10 40 IPR002110 GO:0005515
Vvi13g1150 518 SMART ANK_2a 57 87 IPR002110 GO:0005515
Vvi13g1150 518 SMART ANK_2a 92 124 IPR002110 GO:0005515
Vvi13g1150 518 Gene3D - 176 239 - -
Vvi13g1150 518 ProSiteProfiles Zinc finger C3H1-type profile. 181 203 IPR000571 GO:0046872
Vvi13g1150 518 SUPERFAMILY Ankyrin repeat 10 108 IPR036770 -
Vvi13g1150 518 Pfam Ankyrin repeats (many copies) 58 105 IPR002110 GO:0005515
Vvi13g1150 518 Gene3D - 10 116 IPR036770 -
Vvi13g1150 518 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 107 - -
Vvi13g1150 518 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 291 357 - -
Vvi13g1150 518 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 111 277 - -
Vvi13g1150 518 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 356 517 - -
Vvi13g1150 518 MobiDBLite consensus disorder prediction 476 495 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g207 Vvi13g1150 ECH
Vvi8g1416 Vvi13g1150 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13848 PF13637 Ank_4 0.0001 CL0465 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1150 - - gmx:100810012 520.776