Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1159 ATGAACGGGAATAGACAAATGGAGGTGCATTACATAAACACTGGCTTTCCTTACACAATTACTGAAAGCTTTATGGACTTCTTTGAAGGTCTTGGCCATGTTCCGGTAAATTATGCTCAGGCTGAAGCAATGCATAATCAGTCTATCCAGGAAAACTTTTACTGGACAATGAATATGAATTCCTACAAATTCGGATTTTCTGGTCCCGGGAGTACTTATTATGGCCCTTATGATGTAAATGAACATGTACCAGGAATAGAGGTCAGCAGGAGACCTTGGGAATACCCTTCATCCATGATTGTTGAAGAACCTACAACCATAGAGACACAGCCTACAGGAAATGAAGTCATGAATGTGCATGCTATTCCTGAAGAATGCAGTCCAAATCATTACAGTGCCACCAGTTCTCAGGCTATTTGGCAAGACAATGTTGATCCTGATAACATGACCTATGAGGAATTGCTTGATTTGGGTGAGGCAGTGGGAACTCAAAGTCGAGGTCTTTCCCAGGAGCATATTAACTTGCTTCCAACCTGTAGGTACAAGTCCGGCCGCTTATTCTCAAGAAAAAGATCTGCGGAGAGATGTGTGATTTGCCAGATGGGGTATAAAAGAGGGGACCGTCAAATAAAATTACCCTGCAAGCATGTCTATCACACAGACTGTGGCACGAAATGGCTTACCATCAACAAGGTATGCCCAGTTTGCAACATCGAGGTATTTGGCGAGGAATCAAGGCACTAA 744 43.01 MNGNRQMEVHYINTGFPYTITESFMDFFEGLGHVPVNYAQAEAMHNQSIQENFYWTMNMNSYKFGFSGPGSTYYGPYDVNEHVPGIEVSRRPWEYPSSMIVEEPTTIETQPTGNEVMNVHAIPEECSPNHYSATSSQAIWQDNVDPDNMTYEELLDLGEAVGTQSRGLSQEHINLLPTCRYKSGRLFSRKRSAERCVICQMGYKRGDRQIKLPCKHVYHTDCGTKWLTINKVCPVCNIEVFGEESRH* 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 22907328 22911879 - Vvi13g1159 Vvi13g1159 774945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1159 247 SMART ring_2 196 236 IPR001841 -
Vvi13g1159 247 SUPERFAMILY RING/U-box 195 241 - -
Vvi13g1159 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 1 247 - -
Vvi13g1159 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 241 IPR013083 -
Vvi13g1159 247 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
Vvi13g1159 247 Pfam Ring finger domain 195 237 IPR001841 -
Vvi13g1159 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 247 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g183 Vvi13g1159 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1159 K19045 - vvi:100253394 530.791