Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1163 ATGACAGACCCCCACTGCAATTTCTTCAAAGGGTGGTTCAACTTCATGCCACTCCAGCCCCACTTCCCTCCCTCCATCTCTCCCTATCCTGCTCATGCCTGCAACAACTTGTACTCACAATCTCAAACCCCACCTCCTTCACCCCCTCTGAAAGAAGCTCTTCCCCTCCTCAGCCTCAGCCCAATTAGTAGAAGACAAGATGAGCCTCAAACCAGAGATAAGGCTCAGAGCCTCTTCTCAACAAGTGCTTCTGATGGTGATGATAAAAGAACGGTGACAGTAGCCCTACATATTGGACTCCCTAGCCCTAGTTCTGATCTGGTGGGCTCTAGCCTACCCTCCTCAACAGAGATGAGTATTGATCAGGATCAAGGAATCCTTGGAGCTTCAGGGTGCCCCTTCAACAGAGTCAACAATGGCCAGTACTGGATCCCTACTCCCTCTCAGATTCTCATTGGCCCTACACAGTTTTCATGTGCTGTTTGCTGCAAAACCTTTAATAGATACAACAACCTCCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAAGGACCGGAATCCTTGAGGGGAACACAGCCAACAGCCATGCTAAAGCTCCCATGCTACTGCTGCTCACCAGGCTGCAAGCACAACATAGATCACCCAAGATCAAGGCCACTCAAAGACTTCAGAACCCTCCAAACCCACTACAAAAGAAAGCATGGAATAAAGCACTTCCTCTGCAGAAAATGCAATAAGCCCTTTGCTGTGAAAGGAGACTGGAGAACCCATGAGAAGAACTGTGGCAAAGTCTGGTACTGCATCTGTGGTTCTGATTTCAAGCACAAGAGGTCTCTCAAAGACCACATCAAGGCCTTTGGCCGAGGCCATGCAGCCATTGGCACTGACTTTTTTGATCAGGAAGAGGATGATCCTGCATCTGAAATTGAACATGATGGAGAACCCTCACCCTCAGTGTGA 966 48.65 MTDPHCNFFKGWFNFMPLQPHFPPSISPYPAHACNNLYSQSQTPPPSPPLKEALPLLSLSPISRRQDEPQTRDKAQSLFSTSASDGDDKRTVTVALHIGLPSPSSDLVGSSLPSSTEMSIDQDQGILGASGCPFNRVNNGQYWIPTPSQILIGPTQFSCAVCCKTFNRYNNLQMHMWGHGSQYRKGPESLRGTQPTAMLKLPCYCCSPGCKHNIDHPRSRPLKDFRTLQTHYKRKHGIKHFLCRKCNKPFAVKGDWRTHEKNCGKVWYCICGSDFKHKRSLKDHIKAFGRGHAAIGTDFFDQEEDDPASEIEHDGEPSPSV* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 22957537 22960581 + Vvi13g1163 Vvi13g1163 774949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1163 321 MobiDBLite consensus disorder prediction 63 86 - -
Vvi13g1163 321 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Vvi13g1163 321 PANTHER ZINC FINGER PROTEIN WIP2 1 314 IPR043584 GO:0003700|GO:0010468
Vvi13g1163 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 184 IPR013087 -
Vvi13g1163 321 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 314 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g176 Vvi13g1163 ECH
Vvi8g1404 Vvi13g1163 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13850 None None None None Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1163 - - vvi:100244743 641.343