Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1179 ATGCAGAAGATGGCATTTTCAGTGATAAGACTAAACACCAGTGGCATTTTGGAAAGTTTTGGATTTACTCCAACCAGGGAGATGGGAAACCTTAGAGCAGGCAACAGTACTAATGTCGAAGCCAATCCGTCGGTTAGCAGACTGAACAATCAAATAAGCTTCTCATCTGGGTTATCTTCTTGCAATGGACTACTACCTAAAATCTCCGAAATCAGAAATGAAAACATAGGGCTGCATAGCCCCAAGGATGGCAATAATAGTAACAGCAGATGCTACATTTCTAACTTCACAACAGATTCCTGGAGTGATTCTCCCTTCAGTGGTCTGACAAGAATGGCTGCTGATAATGATTTGAAGATGTTTTCGGGTTTAAACAGTTTGGAAGCTCAGAATGTGGATTCGCGATATCGGTCCCTTGGCTTGACTCACCATCTGAGCTTGCCTAAAAACTTCCCTCAGATCACTACTATAGAGAAGTTTCTGCACTTCCAAGACTCGGTTCCTTGTAAGATTCGAGCGAAAAGAGGATGTGCCACCCATCCCAGAAGCATAGCAGAGAGAGTGAGAAGAACCCGAATCAGCGAAAGAATGAGGAAACTGCAGGAGCTTTTTCCCAACATGGACAAGCAAACAAACACAGCAGATATGCTAGATTTGGCAGTAGAATACATCAAAGACCTTCAGAAACAGGTCAAGACACTTAATGATACTAAAGTCAAGTGCACATGTTCCAGCATATGA 741 42.78 MQKMAFSVIRLNTSGILESFGFTPTREMGNLRAGNSTNVEANPSVSRLNNQISFSSGLSSCNGLLPKISEIRNENIGLHSPKDGNNSNSRCYISNFTTDSWSDSPFSGLTRMAADNDLKMFSGLNSLEAQNVDSRYRSLGLTHHLSLPKNFPQITTIEKFLHFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELFPNMDKQTNTADMLDLAVEYIKDLQKQVKTLNDTKVKCTCSSI* 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23164791 23167627 + Vvi13g1179 Vvi13g1179 774965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1179 246 Pfam Helix-loop-helix DNA-binding domain 182 228 IPR011598 GO:0046983
Vvi13g1179 246 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 20 245 - -
Vvi13g1179 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983
Vvi13g1179 246 CDD bHLH_AtbHLH_like 182 234 IPR045239 -
Vvi13g1179 246 Gene3D - 178 244 IPR036638 GO:0046983
Vvi13g1179 246 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 20 245 - -
Vvi13g1179 246 SMART finulus 183 233 IPR011598 GO:0046983
Vvi13g1179 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 238 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g1384 Vvi13g1179 ECH
Vvi6g164 Vvi13g1179 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13851 PF00010 HLH 2.40E-09 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1179 - - vvi:100855101 457.218