Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g1249 ATGGAGCTGGAGCTGAGCCTGGGCGATGCTTCTTCGAAGCCCTTTGCTTTCATGGAGAAGGCTCACCGTCAGGTTGCCAACAAGGGTTTAGGGTTTAGCATGGGTTTAGGGCTGGGTTCTGCTGGAAGAGACCAGGAAGAACAGAAAATCCATGAAGTGGCTGATGATGACGACGACGACGACGATGGAGAAGACGACGATGATGGAAGGGACCAAAGGCCCTCCATGGGTCTGCCTCTTCAGCTCGATCTTCTTCCTCTCGCTCCAGTTCCAAGGAATCAAGCTTCGCACCAGGGCCTGACATGGCCGTCTGACAACGGGAGCTCCGAGGCGGGCTCGTCCGGAAACGTGGGGCTACCGGCGAGGGGGCTTGACGTGAACAGGCTGCCGTCTACGGCGGTGACGGCGGCGGCGGGGGAGGAGGTGGAGGACGGGGCGGCGGCGGAGGTGGAATCGTCTCCGAATAGTGCAGCGTCGTCTTTTCAGATGGATTTCTGCATTTACAGAGGCGGAAATGGCGGAACCAAGAGGGACTTCGAAAGTGGTGAGGCGGAGAGAACTTCTTCCAGAGCCAGCGACGAAGACGATAACGGCCTCACCAGAAAAAAGCTCCGTCTCTCCAAAGAACAGTCCGCTTTCCTCGAAGAAAGCTTCAAAGAACACAACACCCTCAATCCTAAACAGAAGCTGGCGCTTGCAAAGCAGTTGAACCTGCGGCCACGGCAAGTGGAAGTTTGGTTTCAGAATAGAAGAGCAAGGACGAAGTTGAAGCAGACGGAAGTGGACTGCGAGTATCTGAAGAGGTGCTGCGAGACACTGACAGAAGAAAACAGAAGACTCCACAAGGAGCTTCAAGAGCTGAGGGCTCTCAAGACTTCCAACCCATTCTACATGCAGCTCCCCGCCACCACCCTCACCATGTGCCCCTCCTGTGAGCGGGTCGCCGCCACCTCCACCGCCCCCTCGGCCGCCGCGTCCACCGCCACCACCCATATAGTGTTGATTGGTGTTCGTGTTTTTGTGGTGTCTCCTTTTCTTTTATACCAAATGATTCACCCAAACACCATTCATTAA 1074 55.68 MELELSLGDASSKPFAFMEKAHRQVANKGLGFSMGLGLGSAGRDQEEQKIHEVADDDDDDDDGEDDDDGRDQRPSMGLPLQLDLLPLAPVPRNQASHQGLTWPSDNGSSEAGSSGNVGLPARGLDVNRLPSTAVTAAAGEEVEDGAAAEVESSPNSAASSFQMDFCIYRGGNGGTKRDFESGEAERTSSRASDEDDNGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVAATSTAPSAAASTATTHIVLIGVRVFVVSPFLLYQMIHPNTIH* 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 24027378 24029185 + Vvi13g1249 Vvi13g1249 775035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g1249 357 Pfam HD-ZIP protein N terminus 28 161 IPR006712 GO:0005634
Vvi13g1249 357 PANTHER PROTEIN, PUTATIVE-RELATED 59 332 - -
Vvi13g1249 357 Gene3D - 205 255 - -
Vvi13g1249 357 CDD homeodomain 201 258 IPR001356 GO:0003677
Vvi13g1249 357 MobiDBLite consensus disorder prediction 176 200 - -
Vvi13g1249 357 SMART HOX_1 199 261 IPR001356 GO:0003677
Vvi13g1249 357 Pfam Homeodomain 201 255 IPR001356 GO:0003677
Vvi13g1249 357 Pfam Homeobox associated leucine zipper 257 291 IPR003106 GO:0006355|GO:0043565
Vvi13g1249 357 SMART halz 257 300 IPR003106 GO:0006355|GO:0043565
Vvi13g1249 357 PANTHER - 59 332 - -
Vvi13g1249 357 MobiDBLite consensus disorder prediction 31 124 - -
Vvi13g1249 357 ProSitePatterns 'Homeobox' domain signature. 232 255 IPR017970 GO:0000981|GO:0006355
Vvi13g1249 357 MobiDBLite consensus disorder prediction 94 115 - -
Vvi13g1249 357 Coils Coil 270 293 - -
Vvi13g1249 357 ProSiteProfiles 'Homeobox' domain profile. 197 257 IPR001356 GO:0003677
Vvi13g1249 357 MobiDBLite consensus disorder prediction 51 68 - -
Vvi13g1249 357 SUPERFAMILY Homeodomain-like 194 258 IPR009057 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13852 PF04618 HD-ZIP_N 5.30E-07 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g1249 K09338 - vvi:100256230 574.318