Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi13g1249 | ATGGAGCTGGAGCTGAGCCTGGGCGATGCTTCTTCGAAGCCCTTTGCTTTCATGGAGAAGGCTCACCGTCAGGTTGCCAACAAGGGTTTAGGGTTTAGCATGGGTTTAGGGCTGGGTTCTGCTGGAAGAGACCAGGAAGAACAGAAAATCCATGAAGTGGCTGATGATGACGACGACGACGACGATGGAGAAGACGACGATGATGGAAGGGACCAAAGGCCCTCCATGGGTCTGCCTCTTCAGCTCGATCTTCTTCCTCTCGCTCCAGTTCCAAGGAATCAAGCTTCGCACCAGGGCCTGACATGGCCGTCTGACAACGGGAGCTCCGAGGCGGGCTCGTCCGGAAACGTGGGGCTACCGGCGAGGGGGCTTGACGTGAACAGGCTGCCGTCTACGGCGGTGACGGCGGCGGCGGGGGAGGAGGTGGAGGACGGGGCGGCGGCGGAGGTGGAATCGTCTCCGAATAGTGCAGCGTCGTCTTTTCAGATGGATTTCTGCATTTACAGAGGCGGAAATGGCGGAACCAAGAGGGACTTCGAAAGTGGTGAGGCGGAGAGAACTTCTTCCAGAGCCAGCGACGAAGACGATAACGGCCTCACCAGAAAAAAGCTCCGTCTCTCCAAAGAACAGTCCGCTTTCCTCGAAGAAAGCTTCAAAGAACACAACACCCTCAATCCTAAACAGAAGCTGGCGCTTGCAAAGCAGTTGAACCTGCGGCCACGGCAAGTGGAAGTTTGGTTTCAGAATAGAAGAGCAAGGACGAAGTTGAAGCAGACGGAAGTGGACTGCGAGTATCTGAAGAGGTGCTGCGAGACACTGACAGAAGAAAACAGAAGACTCCACAAGGAGCTTCAAGAGCTGAGGGCTCTCAAGACTTCCAACCCATTCTACATGCAGCTCCCCGCCACCACCCTCACCATGTGCCCCTCCTGTGAGCGGGTCGCCGCCACCTCCACCGCCCCCTCGGCCGCCGCGTCCACCGCCACCACCCATATAGTGTTGATTGGTGTTCGTGTTTTTGTGGTGTCTCCTTTTCTTTTATACCAAATGATTCACCCAAACACCATTCATTAA | 1074 | 55.68 | MELELSLGDASSKPFAFMEKAHRQVANKGLGFSMGLGLGSAGRDQEEQKIHEVADDDDDDDDGEDDDDGRDQRPSMGLPLQLDLLPLAPVPRNQASHQGLTWPSDNGSSEAGSSGNVGLPARGLDVNRLPSTAVTAAAGEEVEDGAAAEVESSPNSAASSFQMDFCIYRGGNGGTKRDFESGEAERTSSRASDEDDNGLTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVAATSTAPSAAASTATTHIVLIGVRVFVVSPFLLYQMIHPNTIH* | 358 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 24027378 | 24029185 | + | Vvi13g1249 | Vvi13g1249 | 775035 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi13g1249 | 357 | Pfam | HD-ZIP protein N terminus | 28 | 161 | IPR006712 | GO:0005634 | |
Vvi13g1249 | 357 | PANTHER | PROTEIN, PUTATIVE-RELATED | 59 | 332 | - | - | |
Vvi13g1249 | 357 | Gene3D | - | 205 | 255 | - | - | |
Vvi13g1249 | 357 | CDD | homeodomain | 201 | 258 | IPR001356 | GO:0003677 | |
Vvi13g1249 | 357 | MobiDBLite | consensus disorder prediction | 176 | 200 | - | - | |
Vvi13g1249 | 357 | SMART | HOX_1 | 199 | 261 | IPR001356 | GO:0003677 | |
Vvi13g1249 | 357 | Pfam | Homeodomain | 201 | 255 | IPR001356 | GO:0003677 | |
Vvi13g1249 | 357 | Pfam | Homeobox associated leucine zipper | 257 | 291 | IPR003106 | GO:0006355|GO:0043565 | |
Vvi13g1249 | 357 | SMART | halz | 257 | 300 | IPR003106 | GO:0006355|GO:0043565 | |
Vvi13g1249 | 357 | PANTHER | - | 59 | 332 | - | - | |
Vvi13g1249 | 357 | MobiDBLite | consensus disorder prediction | 31 | 124 | - | - | |
Vvi13g1249 | 357 | ProSitePatterns | 'Homeobox' domain signature. | 232 | 255 | IPR017970 | GO:0000981|GO:0006355 | |
Vvi13g1249 | 357 | MobiDBLite | consensus disorder prediction | 94 | 115 | - | - | |
Vvi13g1249 | 357 | Coils | Coil | 270 | 293 | - | - | |
Vvi13g1249 | 357 | ProSiteProfiles | 'Homeobox' domain profile. | 197 | 257 | IPR001356 | GO:0003677 | |
Vvi13g1249 | 357 | MobiDBLite | consensus disorder prediction | 51 | 68 | - | - | |
Vvi13g1249 | 357 | SUPERFAMILY | Homeodomain-like | 194 | 258 | IPR009057 | - |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13852 | PF04618 | HD-ZIP_N | 5.30E-07 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi13g1249 | K09338 | - | vvi:100256230 | 574.318 |