Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi13g1281 | ATGGATTTACGTTCATTTTTTATCCGCTTCTGGTCAGTCTGCAAGAACATTCATTATCTTTATTCATTTTTTATTTTATTTTTGTTTTTTTGGATGATCAAGGGAACTCCTGTAAACATCATAGTTGGGTCACATGCGTGGGCTGAGGATCCTGATGCGGCATGGATTGATGGAGAGGTGATAGGAATTGAAGGCAGAAATGCAACAATAGTTACTACAGATGGGAAAACTATAGTTGCAGATATTTCAAACATATACCCAAAAGACACAGAAGCACCGCCTGCTGGGGTCGATGACATGACCAAATTAGCTTACCTCCATGAACCAGGAGTCCTACACAACCTTGCTTCTCGCTTTGCTCTCAATGAGATATATACTTACACGGGGAACATTCTAATAGCGGTGAATCCCTTTCAAAGACTGCCACACTTGTATGACATCCACATGATGGGGCAATACAAAGGCGCTGCTTTTGGAGAGCTTAGTCCACATCTCTTTGCTGTTGCAGATACTTGCTACAGGGCAATGATAAATGAACAGAAAAGCCAATCCATATTGGTTAGTGGAGAGAGTGGAGCTGGTAAAACAGAGACAACAAAAATGCTCATGAGATACCTTGCATTCATGGGGGGCAGATCAGGTACTGAGGGAAGAACAGTAGAACAACAAGTTTTGGAGTCCAACCCAGTCTTGGAAGCATTTGGGAATGCCAAAACTGTGAAAAACAACAATTCCAGTCGTTTTGGTAAATTTGTCGAGATCCAATTTGATAAGCATGGGAAAATCTCTGGGGCTGCAGTTCGTACATATCTTCTCGAAAGGTCACGTGTTTGCCAAGTCTCTGACCCAGAAAGGAACTATCATTGCTTTTACATGCTCTGTGCAGCACCACCAGAGGATGTCAAGAAATTCAAGTTAGGGGACCCAAGATCATTCCACTATCTAAACCAAACTAACTGTTATGAAGTTGCAAATGTAAATGATGCAAGAGAGTATCTGGAAACCAGAAATGCCATGGATGTTGTAGGGATCAGTCAAGATGAGCAGGATGCCATATTCCGTGTGGTAGCTGCAATTCTGCATCTCGGAAACATTGGGTTCATCAAAGGGAAGGAAGCCGATTCTTCCAAACTGAAGGATGAGAAAGCACTTTACCATCTTCGAACAGCTGCAGAGCTACTCATGTGTGATGAGAAGGCATTGGAGGACTCACTGTGCCAGCGTGTCATAGTAACCCCTGATGGAAACATCACAAAACCACTGGATCCAGATTTAGCTGTCTTTAGTCGTGATGCCTTGGCAAAGACAGTATACTCCAGACTATTTGATTGGATTGTCGATAAGATAAACAGTTCTATCGGCCAGGATCCCAATGCAACAAGCATAATTGGAGTTCTTGATATTTATGGCTTTGAGAGCTTCAAGATCAACAGTTTTGAGCAGCTATGTATCAACCTGACAAATGAGAAGTTGCAACAGCATTTTAATCAGCATGTATTTAAGATGGAGCAAGAAGAGTACAAACGAGAGGAAATCAACTGGAGCTATGTAGAATTCATAGATAACCAAGATGTTTTAGATCTGATTGAGAAGAAACCAGGAGGCATAATTGCACTTCTTGATGAAGCCTGTATGTTTCCTAAGTCAACCCATGAGACATTTGCACAAAAGATGTATCAGACATATAAAGGACATAAGCGCTTCAGCAAGCCCAAACTTGCCCGAACAGATTTCACAATCAATCATTATGCAGGGGATGTTATATACCAAGCTGACCAGTTCCTTGACAAAAACAAGGATTACGTTGTAGCAGAACACCAAGCTTTACTAAATGCCTCCAAGTGCCCTTTTGTTGCAAATCTCTTCCCTCTATTATCTGAGGAAGCATCAAAGCAATCAAAGTTCTCTTCCATTGGTACCCGCTTCAAGCAACAACTACAAGCTTTAATGGAAACCTTGAGCACCACAGAACCACATTACATCAGATGTGTAAAGCCCAATGCAGTTTTGAAGCCTGCGATATTTGAGAACTTCAATGTCTTAAACCAGTTAAGATGTGGGGGAGTACTAGAGGCAATCAGGATAAGTTGTGCTGGGTATCCAACAAAAAGGACATTTGATGAGTTCTTTGACCGTTTTGGAATGTTAGCTCCAGATGTTCTAGATGGAGCCGATGAGAAATCAGCATGTATTGCCATCTGTGATAGAATGGGCTTAAAGGGCTATCAGATTGGGAAAACAAAAGTGTTTCTTAGAGCTGGGCAGATGGCTGAATTAGATGCACGAAGAACTGAAGTTTTAGCTAATGCTGCAAGACGCATCCAGAGGCAAATCCAAACACATCTCACCAGAAAAGAGTTCATTAGACAACGAAGGGCTACAATTCATATGCAGAAACTCTGGAGAGCACAACTTGCACGTAAGCTGTATGAAAGTATGAGGAGGGAAGCTGCTTCAGTCTGTGTACAGAAAAATGTACGCGCTCACACAGCAAGGCGAAATTATACAAACCTACAGGCATCAGCAATGGCGATTCAAACTGGATTGAGAGCAATGGCAGCCCGAAATGAATTCAGATACAGAAGAAGAACCAAGGCTGCAACCCTAATTCAGACTCAATGGCGAGGATTCCAAGCTTTTTCTGCCTATAATCAACAGAAGAAGGCAACTCTTACACTTCAATGTCTATGGAGAGGAAGGGCAGCCAGGAAGGAGCTTAGAAAGCTCAGGATGGCTGCAAGAGAAACAGGAGCACTAAAAGAAGCAAAGGACAAGCTAGAGAAGCGTGTTGAAGAGCTAACATGGCGACTAGAATTTGAAAAGCACTTGAGGATCGATGTTGAAGAAGCAAAAGGGCAAGAAATTTCCAAGCTGCAAAATGCTCTACTTGAAATGCAAGTGCAACTAGAAGAAGCCCATGCAGCAATTATCAGAGAGAAAGAAGCAGCAAAGATTGCTATTGAACAAGCTCCACCAGTGCTCAAAGAGGTGCCAGTCGTAGACAACACCAAGATGGATCTACTGAAAAATCAAAATGAGGAACTCGAGGGTGAGGTAAGCGAGCTGAAAAAGATGGTTGCGGAATTTGAGCAAAAGTATTGTGAAGCACAAAAGGAGAACACAGCAAGGCTTAAAGAAGCAGAAGAGTCATTCACGAGGACGTCACAACTTCAAGAGACTATTGAAAGATTAGAATTGAACTTGTCCAACCTCGAAGCAGAGAACCAGGTTCTACGGCAGCAGGCTTTGGTTGCATCAACAAATGAGGACCTCTTTGAAGAAATGAAAATCCTCAAGGATAAGATTGCAAATTTAGAGTCAGAGAATGAGGTTCTCCGCAACCAGCCAACAAGCATAGAGCAAGTAGCCGCTCTTGAAAGGGTTCCACCACAAGTGAAGAGTTTTGATAATGGACATAAAATGGAAGAAGAGCTCCAAACAACAAAAGAGTTGGTGCCTTTTGCCCCAATCCTAACTAAACAACGATCCCTGACAGACAGGCAACAGGAAAACCATGATGTACTAATAAAGTGTCTCATGGAAGACAAGCGATTTGACAAGAACAGGCCTGTTGCTGCCTGTATTGTGTACAAAGCACTTCTTCAGTGGAGATCCTTTGAAGCAGAGAAGACAAATATATTTGATAGGATTATCCACACAATCCGTTCATCTATAGAGAGTCAGGAAAGCATCAGTAATCTAGCATATTGGCTCTCGACAACTTCAACCCTTCTGTTCCTTGTACAAAGTACACTCAAGGCAAGCAATACACCTAATGTGACTTCATTTCGTAGCCGAAATTCACCCACCACTTTGTTCGGTAGAATGGCACAAGGTCTCCGCTCATCTTCATTTCCTATGGGAGTTTCAAGTGGGTACAGTGGAATGGTGGGAAAGCCAAACACGCACTCAAAAGTGGAACCCAAGTACCCTGCCTTACTGTTTAAGCAACATTTAACTGCATATCTTGAAAAAATATATGGGATGATTCGTGATAGCTTAAAGAAAGAGATTAGTCCATTTTTGAACTTGTGCATACAGGCACCCAGATCCACAAGGGCCAGATCAATAAGAGGGTCATCCAAAAATATCCATTCAAATATAGTTGCAAAACAGCAAGCATCAAACATACACTGGCAAAATATTGTCAATAGCCTGGATCATACCTTGGGAATAATGTCTGAGAACCATGTCCCTTCTATGATAACAAGGAAAATCTTCAGTCAGGTATTCTCATTCATAAATGTTCAGCTTTTTAACAGTTTACTACTTCGCCGGGAATGTTGTTCATTTAGCAATGGAGAATACGTAAAGGCTGGTTTGCAGGAATTGGAACAGTGGTGCTTTAAAGCAAAGGACGAGTTTGCTGGATCATCATGGGATGAACTCCAACACATAAGACAAGCAGTAGGGTTTCTGGTTTTGCATCAAAAACCTCAGAAATTTTTGGATGACATCACAAATGAACTCTGCCCGATGTTAAGCATTCCACAAATATATCGCATTGGAACCATGTTTTGGGATGACAAATATGGCACCCATGGACTATCTCCAGATGTAATCGGCAAGATGAGAGTGCTAATGACAGAAGATTCCATAAACATGCCCAATAATTCATTCTTGTTGGATGTTGATTCTCGGATACCTTTCTCTATGGAAGAGATGTCACGATCCTTGATCGACATCAACCTATCCTACGTGGATCCTCCACCCCTCCTTCGTCAGAGATCTGATTTCCATTTCCTCTTGCAGCCAACAGATTGA | 4764 | 42.0 | MDLRSFFIRFWSVCKNIHYLYSFFILFLFFWMIKGTPVNIIVGSHAWAEDPDAAWIDGEVIGIEGRNATIVTTDGKTIVADISNIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLASRFALNEIYTYTGNILIAVNPFQRLPHLYDIHMMGQYKGAAFGELSPHLFAVADTCYRAMINEQKSQSILVSGESGAGKTETTKMLMRYLAFMGGRSGTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKHGKISGAAVRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKFKLGDPRSFHYLNQTNCYEVANVNDAREYLETRNAMDVVGISQDEQDAIFRVVAAILHLGNIGFIKGKEADSSKLKDEKALYHLRTAAELLMCDEKALEDSLCQRVIVTPDGNITKPLDPDLAVFSRDALAKTVYSRLFDWIVDKINSSIGQDPNATSIIGVLDIYGFESFKINSFEQLCINLTNEKLQQHFNQHVFKMEQEEYKREEINWSYVEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFSKPKLARTDFTINHYAGDVIYQADQFLDKNKDYVVAEHQALLNASKCPFVANLFPLLSEEASKQSKFSSIGTRFKQQLQALMETLSTTEPHYIRCVKPNAVLKPAIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFDEFFDRFGMLAPDVLDGADEKSACIAICDRMGLKGYQIGKTKVFLRAGQMAELDARRTEVLANAARRIQRQIQTHLTRKEFIRQRRATIHMQKLWRAQLARKLYESMRREAASVCVQKNVRAHTARRNYTNLQASAMAIQTGLRAMAARNEFRYRRRTKAATLIQTQWRGFQAFSAYNQQKKATLTLQCLWRGRAARKELRKLRMAARETGALKEAKDKLEKRVEELTWRLEFEKHLRIDVEEAKGQEISKLQNALLEMQVQLEEAHAAIIREKEAAKIAIEQAPPVLKEVPVVDNTKMDLLKNQNEELEGEVSELKKMVAEFEQKYCEAQKENTARLKEAEESFTRTSQLQETIERLELNLSNLEAENQVLRQQALVASTNEDLFEEMKILKDKIANLESENEVLRNQPTSIEQVAALERVPPQVKSFDNGHKMEEELQTTKELVPFAPILTKQRSLTDRQQENHDVLIKCLMEDKRFDKNRPVAACIVYKALLQWRSFEAEKTNIFDRIIHTIRSSIESQESISNLAYWLSTTSTLLFLVQSTLKASNTPNVTSFRSRNSPTTLFGRMAQGLRSSSFPMGVSSGYSGMVGKPNTHSKVEPKYPALLFKQHLTAYLEKIYGMIRDSLKKEISPFLNLCIQAPRSTRARSIRGSSKNIHSNIVAKQQASNIHWQNIVNSLDHTLGIMSENHVPSMITRKIFSQVFSFINVQLFNSLLLRRECCSFSNGEYVKAGLQELEQWCFKAKDEFAGSSWDELQHIRQAVGFLVLHQKPQKFLDDITNELCPMLSIPQIYRIGTMFWDDKYGTHGLSPDVIGKMRVLMTEDSINMPNNSFLLDVDSRIPFSMEEMSRSLIDINLSYVDPPPLLRQRSDFHFLLQPTD* | 1588 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 24372627 | 24391067 | + | Vvi13g1281 | Vvi13g1281 | 775067 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi13g1281 | 1587 | ProSiteProfiles | IQ motif profile. | 838 | 867 | IPR000048 | GO:0005515 | |
| Vvi13g1281 | 1587 | PRINTS | Myosin heavy chain signature | 125 | 144 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi13g1281 | 1587 | PRINTS | Myosin heavy chain signature | 182 | 207 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi13g1281 | 1587 | PRINTS | Myosin heavy chain signature | 229 | 256 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi13g1281 | 1587 | PRINTS | Myosin heavy chain signature | 462 | 490 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi13g1281 | 1587 | PRINTS | Myosin heavy chain signature | 515 | 543 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi13g1281 | 1587 | Coils | Coil | 1005 | 1032 | - | - | |
| Vvi13g1281 | 1587 | Pfam | IQ calmodulin-binding motif | 791 | 810 | IPR000048 | GO:0005515 | |
| Vvi13g1281 | 1587 | Pfam | IQ calmodulin-binding motif | 864 | 883 | IPR000048 | GO:0005515 | |
| Vvi13g1281 | 1587 | Pfam | IQ calmodulin-binding motif | 888 | 907 | IPR000048 | GO:0005515 | |
| Vvi13g1281 | 1587 | Gene3D | - | 472 | 656 | - | - | |
| Vvi13g1281 | 1587 | Coils | Coil | 955 | 975 | - | - | |
| Vvi13g1281 | 1587 | SMART | MYSc_2a | 89 | 765 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi13g1281 | 1587 | Gene3D | - | 285 | 343 | - | - | |
| Vvi13g1281 | 1587 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 817 | 915 | IPR027417 | - | |
| Vvi13g1281 | 1587 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 41 | 90 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi13g1281 | 1587 | CDD | MyosinXI_CBD | 1166 | 1553 | IPR037975 | GO:0007015 | |
| Vvi13g1281 | 1587 | ProSiteProfiles | Myosin motor domain profile. | 95 | 764 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi13g1281 | 1587 | PANTHER | MYOSIN-12 | 53 | 1581 | - | - | |
| Vvi13g1281 | 1587 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 66 | 817 | IPR027417 | - | |
| Vvi13g1281 | 1587 | Gene3D | - | 700 | 762 | - | - | |
| Vvi13g1281 | 1587 | ProSiteProfiles | Dilute domain profile. | 1215 | 1530 | IPR002710 | - | |
| Vvi13g1281 | 1587 | ProSiteProfiles | IQ motif profile. | 790 | 819 | IPR000048 | GO:0005515 | |
| Vvi13g1281 | 1587 | Pfam | DIL domain | 1406 | 1509 | IPR002710 | - | |
| Vvi13g1281 | 1587 | Pfam | Myosin N-terminal SH3-like domain | 43 | 81 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi13g1281 | 1587 | Pfam | Myosin head (motor domain) | 97 | 752 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Vvi13g1281 | 1587 | SMART | iq_5 | 814 | 836 | IPR000048 | GO:0005515 | |
| Vvi13g1281 | 1587 | SMART | iq_5 | 766 | 788 | IPR000048 | GO:0005515 | |
| Vvi13g1281 | 1587 | SMART | iq_5 | 885 | 907 | IPR000048 | GO:0005515 | |
| Vvi13g1281 | 1587 | SMART | iq_5 | 837 | 859 | IPR000048 | GO:0005515 | |
| Vvi13g1281 | 1587 | SMART | iq_5 | 789 | 811 | IPR000048 | GO:0005515 | |
| Vvi13g1281 | 1587 | SMART | iq_5 | 862 | 884 | IPR000048 | GO:0005515 | |
| Vvi13g1281 | 1587 | Coils | Coil | 909 | 943 | - | - | |
| Vvi13g1281 | 1587 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 345 | 634 | - | - | |
| Vvi13g1281 | 1587 | SMART | DIL_2 | 1405 | 1512 | IPR002710 | - | |
| Vvi13g1281 | 1587 | CDD | MYSc_Myo11 | 109 | 752 | IPR036018 | - | |
| Vvi13g1281 | 1587 | Gene3D | - | 765 | 817 | - | - | |
| Vvi13g1281 | 1587 | Gene3D | - | 865 | 914 | - | - | |
| Vvi13g1281 | 1587 | Gene3D | - | 818 | 864 | - | - | |
| Vvi13g1281 | 1587 | Gene3D | Kinesin motor domain | 98 | 695 | IPR036961 | - | |
| Vvi13g1281 | 1587 | ProSiteProfiles | IQ motif profile. | 863 | 892 | IPR000048 | GO:0005515 | |
| Vvi13g1281 | 1587 | Coils | Coil | 1054 | 1115 | - | - | |
| Vvi13g1281 | 1587 | ProSiteProfiles | IQ motif profile. | 815 | 844 | IPR000048 | GO:0005515 | |
| Vvi13g1281 | 1587 | ProSiteProfiles | IQ motif profile. | 886 | 915 | IPR000048 | GO:0005515 | |
| Vvi13g1281 | 1587 | ProSiteProfiles | IQ motif profile. | 767 | 794 | IPR000048 | GO:0005515 | |
| Vvi13g1281 | 1587 | PANTHER | MYOSIN | 53 | 1581 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi13g1281 | K10357 | - | vvi:100266530 | 3097.76 |