Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g133 ATGGGAGCCTCGCTCCTACGCCTTTTCTTCCATGATTGCTTTGTTAATGGATGTGATGGCTCGGTACTTCTAGACGACACATCCTCCTTCATAGGAGAGAAGAATGCAGCTCCAAATGCAAATTCCGTAAGGGGATTCGATGTGGTTGATGATATAAAATCCAAAGTTGAGACGGCCTGCCCAGGTGTGGTCTCGTGTGCTGATGTTCTGGCCATTGCTGCTAGAGACTCTGTAGTCATTCTTGGAGGGCCTAGCTGGAACGTAAAACTTGGGCGAAGAGACGCCCGGACCGCAAGCCAGGCTGCTGCAAACAACAGCATCCCTCCTCCAACTTCAAACCTGAACCAACTAATCTCTAGATTCCAAGCTCTTGGCCTCTCAACCAGGGACTTGGTTGCCTTAGCTGGCTCACACACAATTGGGCAAGCAAGGTGCACATCCTTCAGGGCCCGCATATACAATGAGACAAACATCGATAATTCCTTCGCTAAAACAAGGCAGAGCAACTGCCCAAGAGCCAAAAGGGCTTCTCCACTCTGA 540 50.0 MGASLLRLFFHDCFVNGCDGSVLLDDTSSFIGEKNAAPNANSVRGFDVVDDIKSKVETACPGVVSCADVLAIAARDSVVILGGPSWNVKLGRRDARTASQAAANNSIPPPTSNLNQLISRFQALGLSTRDLVALAGSHTIGQARCTSFRARIYNETNIDNSFAKTRQSNCPRAKRASPL* 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1304493 1306176 + Vvi13g133 Vvi13g133 773919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g133 179 PANTHER PEROXIDASE 1 173 - -
Vvi13g133 179 PRINTS Plant peroxidase signature 4 24 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi13g133 179 PRINTS Plant peroxidase signature 44 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi13g133 179 PRINTS Plant peroxidase signature 63 73 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi13g133 179 PRINTS Plant peroxidase signature 82 97 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi13g133 179 PRINTS Plant peroxidase signature 129 141 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi13g133 179 PANTHER PEROXIDASE 72-RELATED 1 173 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vvi13g133 179 ProSitePatterns Peroxidases active site signature. 2 13 IPR019794 GO:0004601
Vvi13g133 179 ProSitePatterns Peroxidases proximal heme-ligand signature. 130 140 IPR019793 -
Vvi13g133 179 Gene3D Peroxidase, domain 2 108 175 - -
Vvi13g133 179 Pfam Peroxidase 1 173 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi13g133 179 SUPERFAMILY Heme-dependent peroxidases 1 174 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vvi13g133 179 Gene3D - 1 107 - -
Vvi13g133 179 ProSiteProfiles Plant heme peroxidase family profile. 1 179 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi13g133 179 PRINTS Haem peroxidase superfamily signature 2 16 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi13g133 179 PRINTS Haem peroxidase superfamily signature 64 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi13g133 179 PRINTS Haem peroxidase superfamily signature 82 94 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vvi13g133 179 PRINTS Haem peroxidase superfamily signature 130 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g736 Vvi13g133 ECH
Vvi8g365 Vvi13g133 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g133 K00430 - vvi:100257059 346.28