Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g134 ATGTCAAGAGAAAGGGAGAGATTTGATGAGATAGGCAAGAAGATCAAGAGAGAAACCGATGCCTTTACTCAGATGGGAAGAAGACACATGTTGGGGCCTCCCGGAACCCTAAACTCCATCACCCCTTGCGCTGCTTGTAAGCTCTTGAGAAGGAGGTGTGCCCAAGAATGCCCCTTTTCTCCCTACTTCTCTCCCCATGAACCCCAGAAGTTTGCTTCCGTTCACAAAGTCTTCGGCGCCAGCAACGTCTCCAAGATGCTCATGGAAGTCCCGGAAAGCCAAAGAGCCGACGCCGCCAATAGTCTGGTTTATGAGGCCAATGTGCGGCTAAGAGATCCGGTCTATGGTTGCATGGGTGCAATTTCAGCTTTACAACAGCAAGTCCAATCTCTACAAGCTGAACTCAATGCAGTAAGGGCTGAGATACTAAAGTACAAATATAGAGAAGCCAATATCATTCCACCTTCCCATATAGCTTTGCTTTCTTCCGGGGCTGTTTCAGTAGCTGCACCACCACCAGCACAGCCACCAGCACAGGCCCCACCGCCGCCGCCTCCACCTCCTCCTATTCCTCTTCCTCTTCCTCCTAACTCCTCTTCCTCCATGTACACCCAACCGTCGAGCTCCGCCGACTATAGCACCATCTCAAGTGAAAATGTCTCCTACTTCGGTTAA 675 50.81 MSRERERFDEIGKKIKRETDAFTQMGRRHMLGPPGTLNSITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRAEILKYKYREANIIPPSHIALLSSGAVSVAAPPPAQPPAQAPPPPPPPPPIPLPLPPNSSSSMYTQPSSSADYSTISSENVSYFG* 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1310000 1311298 - Vvi13g134 Vvi13g134 773920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g134 224 PANTHER LOB DOMAIN PROTEIN 20 223 - -
Vvi13g134 224 Coils Coil 121 148 - -
Vvi13g134 224 MobiDBLite consensus disorder prediction 197 224 - -
Vvi13g134 224 MobiDBLite consensus disorder prediction 170 196 - -
Vvi13g134 224 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Vvi13g134 224 MobiDBLite consensus disorder prediction 169 224 - -
Vvi13g134 224 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Vvi13g134 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 20 223 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g738 Vvi13g134 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13859 PF03195 LOB 5.40E-41 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g134 - - vvi:100251929 377.481