Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g14 ATGGGGGTGGTTAGGGCTGACTCCAAGTGTTCCACGGTTGGGATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGGTGGGCATATAAATCCAGCGGTGACCTTTGGGCTGTTCTTGGCAAGGAAGCTGTCGCTGACGAGGGCAGTGTACTACATGGTGATGCAGTGCCTGGGTGCGATATGTGGTGCGGGTGTAGTGAAGGGTTTCGAGAAGGGCAGGTACAACTCGCTGGGTGGTGGTGCCAATGTGGTGAACGCTGGCTACACCAAAGGAGATGGGCTTGGTGCTGAGATTGTTGGCACCTTCGTCCTTGTCTACACTGTCTTCTCCGCCACTGACGCCAAGCGTAACGCTAGAGACTCCCACGTCCCTATACTGGCACCGTTGCCAATCGGGTTCGCAGTGTTCTTGGTGCACTTGGCCACCATCCCCATAACTGGAACCGGCATCAACCCAGCTCGGAGCCTGGGTGCGGCCATCATCTACAACAAGGACCACGCATGGGACGACCACTGGATCTTCTGGGTGGGACCATTCATTGGGGCCGCACTAGCAGCTTTATACCACCAGGTGGTCATCAGAGCCATTCCCTTCAAGTCCAAGTGA 642 55.92 MGVVRADSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVYYMVMQCLGAICGAGVVKGFEKGRYNSLGGGANVVNAGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK* 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 154342 155996 - Vvi13g14 Vvi13g14 773800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g14 213 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 213 IPR034294 -
Vvi13g14 213 TIGRFAM MIP: MIP family channel proteins 7 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g14 213 SUPERFAMILY Aquaporin-like 6 206 IPR023271 -
Vvi13g14 213 ProSitePatterns MIP family signature. 40 48 IPR022357 -
Vvi13g14 213 CDD MIP 14 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g14 213 Pfam Major intrinsic protein 11 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g14 213 Gene3D Glycerol uptake facilitator protein. 1 212 IPR023271 -
Vvi13g14 213 PRINTS Major intrinsic protein family signature 22 46 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g14 213 PRINTS Major intrinsic protein family signature 59 78 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g14 213 PRINTS Major intrinsic protein family signature 108 126 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g14 213 PRINTS Major intrinsic protein family signature 144 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g14 213 PRINTS Major intrinsic protein family signature 184 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g14 213 PANTHER AQUAPORIN PIP1-2-RELATED 1 213 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g14 K09872 - vvi:100233000 433.721