Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g140 ATGGAAAATAAGGGGAATGTGCTGATGCAAAGGTATGATGTCGGGAGATTGCTAGGCCAAGGAAACTTTGCTAAGGTTTACTATGGAAGGGATCTAAAAACTGGCCAGAGTGTAGCCATTAAGGTGATCGACAAAGAAAAGATTTTTAAAGTGGGGCTAATTGATCAGACCAAGAGGGAGATATCTGTTATGAAGCTTGTAAAACACCCTAATGTCATTCAGTTTTACGAGGTCATGGCCACCAAAACCAAGATTTACTTTGTTATGGAATATGCCAAAGGTGGTGAGCTGTTTAACAAGGTAGCCAAAGGAAGGCTCATGGAGGATTTTGCAAGGAATTATTTTCAACAGTTGATCAGTGCCGTTGACTTTTGCCACAGCAGAGCGCCAGAAGTGATAAATAGAAAAGGGTATGATGGGGCCAAAGCTGACATCTGGTCTTGTGGGGTGATCTTATTTGTTCTTCTGGCTGGGTATCTCCCATTCCATGATTCAAATCTAATGGAGATGTATAGGAAGATAGGCAAGGCAGATTATAAATGCCCCAATTGGTTCCCATCTGAAGTGCGCAGGTTGCTGTCAAAAATCCTTGACCCAAACCCTAATACTAGGATTTCCATTGCAAAAATAATGGTAAATCCCTGGTTTAGGAGAGGGTTCATCCCCAAGCCTTTGAAAACTAAAACAGAATGCTGCTGCCGGAGAGATGAAAGAGTTGTCGAAACCTACCCAGCCTACCAATTTGAATGCATTTGA 756 42.2 MENKGNVLMQRYDVGRLLGQGNFAKVYYGRDLKTGQSVAIKVIDKEKIFKVGLIDQTKREISVMKLVKHPNVIQFYEVMATKTKIYFVMEYAKGGELFNKVAKGRLMEDFARNYFQQLISAVDFCHSRAPEVINRKGYDGAKADIWSCGVILFVLLAGYLPFHDSNLMEMYRKIGKADYKCPNWFPSEVRRLLSKILDPNPNTRISIAKIMVNPWFRRGFIPKPLKTKTECCCRRDERVVETYPAYQFECI* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1345931 1347522 + Vvi13g140 Vvi13g140 773926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g140 251 Pfam Protein kinase domain 12 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g140 251 PANTHER - 129 232 - -
Vvi13g140 251 PANTHER - 2 128 - -
Vvi13g140 251 ProSiteProfiles Protein kinase domain profile. 12 216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g140 251 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 128 - -
Vvi13g140 251 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 129 232 - -
Vvi13g140 251 Gene3D Transferase(Phosphotransferase) domain 1 3 128 - -
Vvi13g140 251 Gene3D Transferase(Phosphotransferase) domain 1 129 247 - -
Vvi13g140 251 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vvi13g140 251 SUPERFAMILY Protein kinase-like (PK-like) 8 231 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g370 Vvi13g140 ECH
Vvi6g742 Vvi13g140 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76157 PF00069 Pkinase 4.90E-29 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g140 K07198 - vvi:100241678 446.432