Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g142 ATGAAGGGGATGATGAGGAATCCATATGAGTATCACCATGATCTTGGCATGAATTACACATTGATCACTGATCATTTGATTGTGGGCTCCCAGCCTCAGAAACCTGAAGATGTGGATCATCTGAAACAAGAAGAGAATGTGGCCTACATCCTAAATCTGCAGCAGGACAAGGATGTTGAGTATTGGGAGGTTGACTTACCATCTATAATAAAAAGATGTAAAGAACTTGAAATCCGTCACATGAGAAGGCCAGCAAGAGATTTTGATCCAGATTCCTTGAGGAGTGGATTACCTAAAGCAGTTTCGTCGTTGGAATGGGCCATCTCAGAGGGAAAAGGAAAGGTATATGTACATTGTACAGCCGGATTGGGGAGGGCACCAGCCGTTGCAATTGCTTACATGTTCTGGTTTTGTGGCATGGATCTGAATACAGCCTATGATACGCTTACTTCAAAGAGACCGTGCGGACCCAGTAAACAAGCAATACGTGGAGCTACTTACGATCTAGCTAAAAATGACCCATGGAAGGAACCTTTAGAGAGTCTCCCAGAACGTGCTTTTGAAGATGTTGCAGATTGGGAGAGGAACTTGATTCAAGACCGGGTCCGTTCCCTGCGTGGAACTTGA 627 44.66 MKGMMRNPYEYHHDLGMNYTLITDHLIVGSQPQKPEDVDHLKQEENVAYILNLQQDKDVEYWEVDLPSIIKRCKELEIRHMRRPARDFDPDSLRSGLPKAVSSLEWAISEGKGKVYVHCTAGLGRAPAVAIAYMFWFCGMDLNTAYDTLTSKRPCGPSKQAIRGATYDLAKNDPWKEPLESLPERAFEDVADWERNLIQDRVRSLRGT* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1367847 1370392 + Vvi13g142 Vvi13g142 773928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g142 208 ProSiteProfiles Dual specificity protein phosphatase domain profile. 18 175 IPR020422 GO:0006470|GO:0008138
Vvi13g142 208 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 157 IPR029021 -
Vvi13g142 208 Gene3D Protein tyrosine phosphatase superfamily 2 208 IPR029021 -
Vvi13g142 208 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 1 208 - -
Vvi13g142 208 Pfam Dual specificity phosphatase, catalytic domain 39 155 IPR000340 GO:0008138|GO:0016311
Vvi13g142 208 SMART dsp_5 18 160 IPR020422 GO:0006470|GO:0008138
Vvi13g142 208 CDD DSP_laforin-like 17 164 IPR045204 GO:0019203|GO:0046838
Vvi13g142 208 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 95 154 IPR000387 GO:0016311|GO:0016791
Vvi13g142 208 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 208 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g142 - - vvi:100251903 436.802