Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi13g148 | ATGACAAACAAGCCCTTAACTTTAACACGGCAATATCCCAGACTCAAAACGCTGCGTTTTGAACTGAGAGAAGCAAAGCAGAAGGGGAGCTTCCATCTTCCCCAGCTCTCTCTGTGCGTCAATGGAGAAGAAAACGGAGAAAGGGGAAACGGAGAAGCGGCCGAGAAGATCTCCGAGAGCGAGAAGATGGTTCTCAAATCCGTTTCTAGTGTTTATGAGGAAAATTACTTGTTGAGTTTCAACTTGTTTTCTATGGAAAATCTTCAAGAGCGTTTATTACTTTCCTCGTCTTCATCTTGTTCATCTTCTTCCAACCCACACCTAATGTCAGTCACTGCTGAATGCTGGAGTATAACAAAGCTAACAATCCAAGAAATATTATGTGCTATTCAACCAACCATAGTTTCTGAGCAAAGGAGGAAGGAGATTATTGATTATGTTCAGAGGCTAATTAGGGATTCTTTTGGAAATGAGAGAGAAATAGAAGAATCTTCTAGGGCTTCAACCTTTCAGTCTGGTGATGAAAGACCTCTTTTTAAACAAGCAATGCTGGAGAGGAGGAATAGCCGTTCCATTGAAGTACTACTACAAGTTTATTTTGAGGAACCAAAAAATATAAAGCTCTATGTGCTCCCATTTGGCTCAATGCCACTAAAGACCTATCTTCCAGATGGAGATATCGATCTCACTGCCCTCTGCCCTGAAAATGATGAAGAGGATTTCGCTAGAGATGTCTGCACTCTCCTTGAAGGTGAAAGGCAAATGGGCTCAGAGTTTCGAGTAGAAGACATTAGCTACATTCGGGCAAAGGTTAAGATTGTGAAATGCATGGTACAGGATATTTCCGTGGACATATCTTTTAACCAAACTGGTGGACTCTCTACACTATGCTTTCTTGAGCAGATCGACATTCTTATTGGGAAAGACCATCTTTTCAAACGCAGTGTTATCTTGATCAAAGCCTGGTGCTACTATGAAGGTCGAATTCTTGGATCGCATTGTGGCTTGTTGTCGACATATGCATTGGAGATCTTGGTTTTATATGTGATTAACCTCTTTTATTCATCATTATATTGTCCTTTAGCGGTCCTGTACAGATTTTTGGACTACTATAGCACATTTGACTGGGAAAAATTTGGAGTCAGTGTACTTGGTCCTGTTTCTATATCATCCCTTCTCACAGGAGCGCCAGAGGCAGCAGAAACTGCCGATAAACCGTTACTGATTAACGAGGAGTTTCTGTGGAGTTGTAAAGAAGCATTTGCAGTTTCAATAAGGGCATCTGAATGTACAAAGCAGCCATTTCTAGTGAAACATATCAACATTCAGGATCCCCTGAGGGACTACAACAATTTGGGGCGTAGTATAAGCTTAGGTAACTCCTACCGGTTTAGGTATGCCATTTCAGTTGGGGCTCAGAGGCTTAAGGAGATTCTTCTCATGCTACCAGAAGGAAGAATGAATGAGGGACTGAAGGAATTTTTCAACAATACGTTAGATAGGAATGGGGGGGGACAAGGGGCAGATGAAGGTGATCTTGTCCCATTTGGACCTGGAAGCTCTAAATTCTGTAACCTTCAGGGAGACTACTACGGTTGCCTCAGTAATTTGCATTATGGGCAGTTCTATCATGCCAATCTCTCATCCTTCTCTCTCCATCCCGGTTCACTAGATGTCCCATTTCAGTGGATGTATTTTAACCAAAGTAATGTGCCTTGGGGGTACACAAATCATTTTGCCTCAATGCTCCCATCCCAAAATACTTTCCAGTTTTACAGCCCCTCTTTTCAATTTGAAGAACAGGAAAGCAACATGAATGCTTATGTCCCAAGCCTACCCTTCTGCTATGAGACTGCTAGCCAGTTGTCTGGGCTTGCTTATCATTTTGAAGAAAAGGTGCCACAAGGAACAGGCACATTCATCCCTAACGTGGCCCAGATTTTTCATAATGATTTAAACAGATGGGAGCATGGACAGGATCCAGAACATGAACCTCGGAGTGGGATGCCACAAACCAGGTGGGCAGTTAAGAGGAATCCAGTCTCCATGGCTAGCAGTGTGTTGTTGGAACCTGAACAGGAGGGCGGAAAAAATTCAGAACCCACATTGCAGGTTCTGTCACCTAAACCTGAAGATGAGGGAGGGATGGTTTCAAAATCAAAGAACCAAGCTCCATCCTTGAAACCTGAACAGGAGAGACAGAGCAATCAGGAATCCAAAGCACAAGATCTGGTTCTGAAACCTGAATCTGAGAGTGATGAGAGTAGTCAAGAAGCCAAAGCACCAGGTCTGGTGCTGAAACCTGAACCTGAGACAGGCAAGAATCGAGATGTGTCAACTCAAGGCCTGTTGCTGAAACCTGAAGTTGAGCAAAGAAAGAGCCTGACTCCAGAATCCACTCCACAAGGTCCATCGGCAAAAACCCCTCCAGCAAACTATGACCACAGTAAGGTACCCCCACAGATGAACCAGGCCCGAGAAGCTGTAAACAGTGGCTGCCTTCACCCGCTAGAAGAATTCCCAGAACTTCCACACAAGCTGAAGCAGGACAGCAGCCTTGATCCCAAGGACGGCAAGAAAGAACTGGTTCCTGATCAACCATACTCCCTTGCAGACCCCAACGATTTTCCTCCCTTGGGCAGCAAACAGAAGGGTAAAGGTAAGAGTCAGAGGAAAAAATGA | 2682 | 44.07 | MTNKPLTLTRQYPRLKTLRFELREAKQKGSFHLPQLSLCVNGEENGERGNGEAAEKISESEKMVLKSVSSVYEENYLLSFNLFSMENLQERLLLSSSSSCSSSSNPHLMSVTAECWSITKLTIQEILCAIQPTIVSEQRRKEIIDYVQRLIRDSFGNEREIEESSRASTFQSGDERPLFKQAMLERRNSRSIEVLLQVYFEEPKNIKLYVLPFGSMPLKTYLPDGDIDLTALCPENDEEDFARDVCTLLEGERQMGSEFRVEDISYIRAKVKIVKCMVQDISVDISFNQTGGLSTLCFLEQIDILIGKDHLFKRSVILIKAWCYYEGRILGSHCGLLSTYALEILVLYVINLFYSSLYCPLAVLYRFLDYYSTFDWEKFGVSVLGPVSISSLLTGAPEAAETADKPLLINEEFLWSCKEAFAVSIRASECTKQPFLVKHINIQDPLRDYNNLGRSISLGNSYRFRYAISVGAQRLKEILLMLPEGRMNEGLKEFFNNTLDRNGGGQGADEGDLVPFGPGSSKFCNLQGDYYGCLSNLHYGQFYHANLSSFSLHPGSLDVPFQWMYFNQSNVPWGYTNHFASMLPSQNTFQFYSPSFQFEEQESNMNAYVPSLPFCYETASQLSGLAYHFEEKVPQGTGTFIPNVAQIFHNDLNRWEHGQDPEHEPRSGMPQTRWAVKRNPVSMASSVLLEPEQEGGKNSEPTLQVLSPKPEDEGGMVSKSKNQAPSLKPEQERQSNQESKAQDLVLKPESESDESSQEAKAPGLVLKPEPETGKNRDVSTQGLLLKPEVEQRKSLTPESTPQGPSAKTPPANYDHSKVPPQMNQAREAVNSGCLHPLEEFPELPHKLKQDSSLDPKDGKKELVPDQPYSLADPNDFPPLGSKQKGKGKSQRKK* | 894 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 1430016 | 1445333 | - | Vvi13g148 | Vvi13g148 | 773934 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi13g148 | 893 | MobiDBLite | consensus disorder prediction | 689 | 893 | - | - | |
| Vvi13g148 | 893 | MobiDBLite | consensus disorder prediction | 794 | 809 | - | - | |
| Vvi13g148 | 893 | SUPERFAMILY | PAP/OAS1 substrate-binding domain | 311 | 480 | - | - | |
| Vvi13g148 | 893 | PANTHER | PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY | 208 | 738 | - | - | |
| Vvi13g148 | 893 | PANTHER | PAP/OAS1 SUBSTRATE-BINDING DOMAIN SUPERFAMILY | 85 | 158 | - | - | |
| Vvi13g148 | 893 | MobiDBLite | consensus disorder prediction | 839 | 863 | - | - | |
| Vvi13g148 | 893 | Gene3D | - | 359 | 481 | - | - | |
| Vvi13g148 | 893 | SUPERFAMILY | Nucleotidyltransferase | 203 | 328 | IPR043519 | - | |
| Vvi13g148 | 893 | Gene3D | Beta Polymerase, domain 2 | 179 | 314 | IPR043519 | - | |
| Vvi13g148 | 893 | MobiDBLite | consensus disorder prediction | 719 | 743 | - | - | |
| Vvi13g148 | 893 | CDD | NT_PAP_TUTase | 195 | 293 | - | - | |
| Vvi13g148 | 893 | PANTHER | ACID BINDING PROTEIN, PUTATIVE-RELATED | 85 | 158 | - | - | |
| Vvi13g148 | 893 | PANTHER | ACID BINDING PROTEIN, PUTATIVE-RELATED | 208 | 738 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Vvi8g380 | Vvi13g148 | ECH | |
| Vvi6g752 | Vvi13g148 | ECH | |
| Vvi8g678 | Vvi13g148 | ECH |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi13g148 | - | - | vvi:100253615 | 1539.24 |