Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g158 ATGTCTTCTTCATTTCCAAATCCATTCCTCTTCCTGCTCTCTCATAATTCTGAAACCTTGGAGCTTGCTCCACTGCATCTTCATTTACCATTCATCCTCTTGCTCCTTTTCCTTTTCGTTTTCGCTTTTCTCATCCTCTACAGACCCATACCCAAAACCCTAATCACCAAGCAAATGCCACTGCTCCCTCCTGGTCCAACTCCATGGCCATTAGTTGGGAACCTGCCTGAATTATTAACAAAAAAGCCGGTATTCCGGTGGATACTTGGACTTTTGGAGGAACTCAACACTGAGATTGCATGCATCAAACTGGGCAATGTCCATGTCATTCCCGTGATTTCGCCTGAGATTGCCAGGGACAGAGGGTTCCTGACAACAGCTCTTTCTCCATGGGGAGAGCACCATAATATTACGGACTCATCGGTTGTGAATGTGAGAAATGCAGTCAGACAATACACAGGAAATGTGGTTAGGAAGATGATGTTCAGCAGAAGGTACTTTGGGGAAGGAAGGAAAGATGGAGGGCCTGGACTTGAAGAAGAAGAACACGTCAACTCCCTCTTTACTTTGCTTGCTTACCTATATTCATTCTCTCCATCTGATTACCTTCCATGCCTGAGAGTCTTCGACTTAGATGGCCATGAGACGATGGTAAAAGACGCTTTGAGCATCATCAACAAGCATCATGATCCGATAGTGGATGAGAGAATAATACAATGGAGGAATGGGGAGAAGAAGGAGGTTGAGGACATACTCGATGTTTTCCTTACAATCAGCGACACAAAGGGAAAACCATTGCTATCAGTAGAAGAGATCAAAGCCCAACTCATAGAACTGATGATTGAAATAGTGGACAATCCAGCGCATGCAGCTGAGTGGGCAATGGCAGAAATGATCAATCAACCCGAGATTATGCAGAAGGCCGTAGAAGAAATCGATAGAGTGGTTGGAAAGGATAGACTTGTTCAAGAATCCGATATCGCGCAGCTCAAATATGTTAAAGCCTGTGCTAGGGAAGCTCTGCGGCTTCACCCCATGGCACCATTCAACGTGCCCCATGTGTCCATGGCGGACGCCGTTGTGGCCGGTTACTTCATCCCCAAAGGCAGCCATGTCCTGCTGAGCCGGGTAGGGCTTGGACGGAACCCTAGAGTGTGGGAAGAGCCATTAAAGTTTAAACCAGAGCGGCACATGAATGATGAAGTGGTGGATTTAGCTGAGCATGAGCTTCGGTTCATTTCATTTAGTACTGGGAGACGCGGGTGTCCTGGAACTGCCTTAGGGACAGCCTTGACAGTTACACTCTTGGCGAGACTCCTTCAATGTTTTTCGTGGAGTGTGCCACCGAACCAGGACCAAATTGACCTCACAGAATCAATGAACGAGCTCTTTCTAGCCAAGCCTCTCCATGCTCATGCAAAACCACGCTTGCCTGCTTCCATGTATGGGAATTGA 1455 47.08 MSSSFPNPFLFLLSHNSETLELAPLHLHLPFILLLLFLFVFAFLILYRPIPKTLITKQMPLLPPGPTPWPLVGNLPELLTKKPVFRWILGLLEELNTEIACIKLGNVHVIPVISPEIARDRGFLTTALSPWGEHHNITDSSVVNVRNAVRQYTGNVVRKMMFSRRYFGEGRKDGGPGLEEEEHVNSLFTLLAYLYSFSPSDYLPCLRVFDLDGHETMVKDALSIINKHHDPIVDERIIQWRNGEKKEVEDILDVFLTISDTKGKPLLSVEEIKAQLIELMIEIVDNPAHAAEWAMAEMINQPEIMQKAVEEIDRVVGKDRLVQESDIAQLKYVKACAREALRLHPMAPFNVPHVSMADAVVAGYFIPKGSHVLLSRVGLGRNPRVWEEPLKFKPERHMNDEVVDLAEHELRFISFSTGRRGCPGTALGTALTVTLLARLLQCFSWSVPPNQDQIDLTESMNELFLAKPLHAHAKPRLPASMYGN* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1541966 1543728 - Vvi13g158 Vvi13g158 773944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g158 484 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 34 120 - -
Vvi13g158 484 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 135 481 - -
Vvi13g158 484 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 415 424 IPR017972 GO:0005506|GO:0016705
Vvi13g158 484 Pfam Cytochrome P450 139 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g158 484 PANTHER PHENYLALANINE N-MONOOXYGENASE 135 481 - -
Vvi13g158 484 PANTHER PHENYLALANINE N-MONOOXYGENASE 34 120 - -
Vvi13g158 484 PRINTS P450 superfamily signature 300 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g158 484 PRINTS P450 superfamily signature 335 346 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g158 484 PRINTS P450 superfamily signature 413 422 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g158 484 PRINTS E-class P450 group I signature 152 170 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g158 484 PRINTS E-class P450 group I signature 291 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g158 484 PRINTS E-class P450 group I signature 334 352 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g158 484 PRINTS E-class P450 group I signature 375 399 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g158 484 PRINTS E-class P450 group I signature 412 422 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g158 484 PRINTS E-class P450 group I signature 422 445 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g158 484 Gene3D Cytochrome P450 56 480 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi13g158 484 SUPERFAMILY Cytochrome P450 63 476 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g158 K12153 - vvi:100253513 876.7