Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g162 ATGTCGAGAGGGGAGAGTCTGTTTGTGGACACTATAGAGGCCAAGAAGGCAATGGCTCCAGATAAGCTCGCTGAGCTTTGGACGCTCGATCCGAAGCGAGCCAAGAGGATTCTGGCAAATCGGCAATCTGCTGCTCGCTCAAAAGAGAGGAAGGCTCGGTACATATTAGAGCTTGAAAGAAAAGTCCAGACCCTTCAAACAGAAGCAACCACTCTTTCTGCACAACTCACGCTTTTCCAGAGAGACACAACTGGCCTGACTACTGAAAACACAGAGCTTAAGCTTAGGTTACAAGCTATGGAACAACAAGCTCAACTACGTGATGCTCTGAATGAAGCACTAAAGAAGGAAGTAGAGAGGCTTAAGATTGCTACTGGAGAAATAATGACCTCCTCAGATGCATACAATTTGGGAATGCACCATGTTCCATATACTCAATCTTCTTTCTTCTCACACCAGTCACAACCAGGACCAAATATGTTGCAGCAGGATCCTCTTGGACGATTGCAGGGGCTTGATATCAGTAGCAGGGGCCCTAGTCTTGTGAAGTCTGAAGGCCCATCCATTTCTGCCAGTGAAAGCAGCAGCACATTTTAA 597 46.73 MSRGESLFVDTIEAKKAMAPDKLAELWTLDPKRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLFQRDTTGLTTENTELKLRLQAMEQQAQLRDALNEALKKEVERLKIATGEIMTSSDAYNLGMHHVPYTQSSFFSHQSQPGPNMLQQDPLGRLQGLDISSRGPSLVKSEGPSISASESSSTF* 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1562451 1569784 + Vvi13g162 Vvi13g162 773948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g162 198 MobiDBLite consensus disorder prediction 170 198 - -
Vvi13g162 198 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 30 93 IPR004827 GO:0003700|GO:0006355
Vvi13g162 198 Gene3D - 31 83 - -
Vvi13g162 198 Coils Coil 48 75 - -
Vvi13g162 198 MobiDBLite consensus disorder prediction 181 198 - -
Vvi13g162 198 PANTHER ATBZIP TRANSCRIPTION FACTOR 6 154 - -
Vvi13g162 198 PANTHER ATBZIP TRANSCRIPTION FACTOR 153 195 - -
Vvi13g162 198 Pfam bZIP transcription factor 32 81 IPR004827 GO:0003700|GO:0006355
Vvi13g162 198 SUPERFAMILY Leucine zipper domain 32 83 IPR046347 GO:0003700|GO:0006355
Vvi13g162 198 SMART brlzneu 28 92 IPR004827 GO:0003700|GO:0006355
Vvi13g162 198 Coils Coil 96 127 - -
Vvi13g162 198 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 154 - -
Vvi13g162 198 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 153 195 - -
Vvi13g162 198 CDD bZIP_plant_RF2 33 82 IPR044759 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g765 Vvi13g162 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13860 PF00170 bZIP_1 7.10E-09 CL0018 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g162 - - vvi:100250056 334.724