Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g164 ATGGCTACTGCAGCATTTTCTTCTATCTCTCTTGCCCTCTTTCTCTTCTGTCTATGCCTCCAAGGCACAAATGGTGACTATGGTGGGTGGGAAGGTGGGCATGCCACATTCTATGGCGGTGGTGACGCCTCAGGCACAATGGGTGGGGCTTGTGGGTATGGCAACTTGTACAGCCAAGGGTATGGGACCAACACTGCAGCTCTCAGCACCGCTCTCTTCAACAGTGGGCTGAGCTGTGGGGCATGTTACGAGATGAAATGCAACGATGACCCCAAATGGTGCCTCCCAGGGACCCTAACCGTGACTGCCACAAACTTCTGCCCTCCTAACTTGGCCTTGTCCAACACCAACGGCGGATGGTGCAATCCCCCCCTTCAGCACTTCGATCTAGCTGAGCCTGCCTTCCTTCAGATTGCCCAGTACCGAGCTGGAATCGTACCTGTGTCTTTCAGAAGAGTCCCCTGTGTGAAGAAAGGAGGGATCCGCTTTACCATCAACGGCCACTCCTACTTCAACTTGGTGCTCATCACAAACGTGGCCGGAGCGGGAGACGTCAGGGCAGTATCAATAAAGGGGTCTAAGACCGGGTGGCAGCCCATGTCAAGGAACTGGGGCCAGAACTGGCAGAGCAACTCATACCTCAACGGCCAGACCCTCTCATTCCAAGTCACAGCAAGCGATGGCCGGACCATGACAAGCCTCAATGTGGCGCCTGCTGGCTGGCAGTTTGGGCAAACATATGAGGGGGCTCAGTTCTAA 759 55.07 MATAAFSSISLALFLFCLCLQGTNGDYGGWEGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGACYEMKCNDDPKWCLPGTLTVTATNFCPPNLALSNTNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCVKKGGIRFTINGHSYFNLVLITNVAGAGDVRAVSIKGSKTGWQPMSRNWGQNWQSNSYLNGQTLSFQVTASDGRTMTSLNVAPAGWQFGQTYEGAQF* 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1578644 1580497 + Vvi13g164 Vvi13g164 773950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g164 252 Pfam Lytic transglycolase 65 150 IPR009009 -
Vvi13g164 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Vvi13g164 252 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Vvi13g164 252 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Vvi13g164 252 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Vvi13g164 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Vvi13g164 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Vvi13g164 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Vvi13g164 252 SUPERFAMILY PHL pollen allergen 157 249 IPR036749 -
Vvi13g164 252 PANTHER EXPANSIN-A15 4 252 IPR002963 GO:0009664
Vvi13g164 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 160 IPR007112 -
Vvi13g164 252 Gene3D - 159 252 IPR036749 -
Vvi13g164 252 Gene3D - 18 155 IPR036908 -
Vvi13g164 252 PANTHER EXPANSIN 4 252 - -
Vvi13g164 252 SUPERFAMILY Barwin-like endoglucanases 29 178 IPR036908 -
Vvi13g164 252 SMART dpbb_1 65 150 IPR007112 -
Vvi13g164 252 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Vvi13g164 252 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Vvi13g164 252 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Vvi13g164 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Vvi13g164 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Vvi13g164 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Vvi13g164 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Vvi13g164 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Vvi13g164 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Vvi13g164 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g164 - K20628 vvi:100244917 530.02