Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g172 ATGTTTTGCGTGGAACGGGATCGGTATTTCCACCCGCAGGGCGGGGAATTCCGGCGGAGCATATACGGAGACGCCCCTCCGGAGCGGCCGGACGGCCGGAACTGGAATGGGAACGGGAACACGCCGACCCCAAGCGGCGAAGGATCGGAAGGCGAGGAGGATGATGATGAGGAGGAGGAAGACGACGATGACGAGGTTGATGAAGGTGATGGTGAAGTGGAAGGGCTTGTTGCGGTGGATGACGCCAATAAGAGTAACAATCATAGTAGTGGTAGCTTACATAGCAGTGCTGATAAGATTGGCAATGGGAAAGCGAAGGACCATTCTTCATTTGGGTCAAATAGGGATGTGTTGATGAAGGATGGCGCCATTGTTCTATCTACAAATAGTGCTAGAGCAAGTCCTAGTGAGAATCATCGGCAAGGACGAATTAGTCATTACCAGAATGCAGTTACAATTGCAGAACCTGATGGCGACATGTACTATTCACAGTTTTTGCAGGGCCCGGAGGGGTCTGCTCCTGGGCAGAAGGAATTAGCTGTGGAAAATGGTTGTGGGTTTAGTGGAAGAAAGGATGTTTCATTATCAACCGAGTCGGGGGAGTCTTTAAAGGCGATTCTTTCAGACCCTCTAACAGGTGCACTTATGGATGATGCAATGATATTACCTTGTGGACATTCCTTTGGAGGTGGTGGAATGCAACATGTCATTAAAATGAAAGCTTGTTCTACTTGTTCGCAACCATTTTCAGAAGACTCAGTGCAACCAAATCTCTCTCTCCGAGCTGCTGTACAGGCATTTCGCCGGGAAGAAGAGCTACAGGTTTACCGCACATCGAAAAGAAGAAGAGAGAGGTCTGACCAGGACAAGTGTAGCTATGGTGATTCAACTCTAATGGATACTCCAAGGGGTAGAGGCGTTCAGTTTCCATTTGCTGTTACCGACCGAGTTATAATAAAGGGGAACAAGAGGACACCACAGCGCTTTGTTGGACGTGAGGCTGTTGTAACAACACAATGCTTGAATGGATGGTATGTGGTGAAGACATTGGATAATGCAGAGAGTGTTAAACTGCAGTATCGTTCACTCGCCAAGGTTCCAGATAATCCATCCTCAAAGCCAATGTTGAGCAAAATGACACCAAACTGGCTCTAG 1155 48.14 MFCVERDRYFHPQGGEFRRSIYGDAPPERPDGRNWNGNGNTPTPSGEGSEGEEDDDEEEEDDDDEVDEGDGEVEGLVAVDDANKSNNHSSGSLHSSADKIGNGKAKDHSSFGSNRDVLMKDGAIVLSTNSARASPSENHRQGRISHYQNAVTIAEPDGDMYYSQFLQGPEGSAPGQKELAVENGCGFSGRKDVSLSTESGESLKAILSDPLTGALMDDAMILPCGHSFGGGGMQHVIKMKACSTCSQPFSEDSVQPNLSLRAAVQAFRREEELQVYRTSKRRRERSDQDKCSYGDSTLMDTPRGRGVQFPFAVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVPDNPSSKPMLSKMTPNWL* 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1617547 1622667 - Vvi13g172 Vvi13g172 773958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g172 384 MobiDBLite consensus disorder prediction 278 297 - -
Vvi13g172 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 274 IPR013083 -
Vvi13g172 384 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 31 384 - -
Vvi13g172 384 MobiDBLite consensus disorder prediction 82 97 - -
Vvi13g172 384 Pfam U-box domain 208 271 IPR003613 GO:0004842|GO:0016567
Vvi13g172 384 MobiDBLite consensus disorder prediction 48 75 - -
Vvi13g172 384 MobiDBLite consensus disorder prediction 100 114 - -
Vvi13g172 384 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 31 384 - -
Vvi13g172 384 MobiDBLite consensus disorder prediction 1 114 - -
Vvi13g172 384 ProSiteProfiles U-box domain profile. 202 274 IPR003613 GO:0004842|GO:0016567
Vvi13g172 384 SUPERFAMILY RING/U-box 201 275 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g172 - - vvi:100262140 713.761