Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g174 ATGGCGTATCTACTCGGTGTATTGTTAGCTTTGCTCGTTGTGGCTCCGAGTTGTGTGAAATCTCTGAACCCATCTCTGAATGATGATGTTCTGGGCTTGATTGTGTTCAAGGCCGATATTCAAGATCCAAATTCGAAGTTGGCATCTTGGAATGAAGATGATGATAGTCCCTGCAACTGGGTTGGGGTCAAATGCAACCCCAGATCCAACCGGGTCACCGACCTCGTTCTCGACGGTTTTTCCCTTTCGGGGAAGATAGGCAGAGGCCTACTCCAGTTACATGTAGGTTCATGTTCAACGCTTGCTGCAATTGACTTCTCCTCTAATCAGTTTTCGGGTCCATTACCTTCTGGCATTTGGTCTTTGAACGGGCTTAGATCACTTGATTTGTCGGATAACTTGTTGGAGGGCGATATACCAAAGGGGATTGACAGTTTGTACAATTTGAGAGCTATTAACTTGAGCAAGAATCGGTTTTCTGGGCCGCTTCCAGATGGCATTGGAGGTTGTTTGCTTTTACGGTTAATTGATTTCAGTGAGAATTCTCTTTCTGGGAGCCTTCCAGGGACAATGCAGAAACTTACCTTGTGTAATTATATGAATTTACACGGGAATTCGTTTGAGGGCGAGGTTCCGGAGTGGATTGGAGAAATGAAAAGCCTGGAGACTTTGGATCTCTCAGCCAATAAATTTTCTGGCAGGGTTCCAACATCAATAGGGAATCTCAAGTCGTTGAAGCTTTTGTTCTTGAATATTTCCAGGAACTCCCTCGTGGGTGCTATTCCAGCAAGTATTGGAGATCTAAAGGCCTTAGATGTTCTTGATTTGAGTGAGAACCAGCTAAATGGAAGCATTCCTCTGGAAATTGGAGGAGCCTTTTCTTTGAAGGATCTGAGATTGAAGAACAACTTCCTAGCTGGAAAAATTCCTGTTTCTCTTGAGAACTGTTCTTCATTAACGACATTGATCCTATCACATAACAATCTGAGTGGCCCAATACCAATGGGGATTTCAAAGCTTAGCAACCTAGAAAATGTGGATTTATCTCTTAACAAGCTCACAGGAAGCCTGCCCAAGCAGTTGGCCAATCTTCCACACCTCATCTCCTTCAACATTTCCCACAATCAGCTCCAAGGTGAACTACCTGCTGGTGGCTTTTTCAACACCATTTCCCCTTCCTCTGTCTCTGGCAATCCATCTCTTTGTGGCTCTGCTGCGAATAAGTCTTGCCCTGCTGTACTTCCCAAGCCCATTGTCCTTAACCCCAATTCTTCCTCTGACACCACTGCGGGTGCATTCCCTCGAAGTCTTGCTCACAAGAAAATCATCCTCAGCATTTCTGCACTCATTGCCATTGGTGCTGCTGCTGTCATTGTAATTGGTGTGATTGCCATCACCGTTCTTAATCTCCGCGTCCGATCTTCTGCATCTCGTTCTGCAGCAGCTCTTGCGCTATCTGGTGGTGATGACTACAGCCATTCCCCTACTACAGATGCCAACTCTGGCAAACTTGTCATGTTTTCGGGTGACCCTGACTTCAGCATGGGAGCACATGCTCTGCTCAACAAGGATTGTGAGCTCGGGCGAGGGGGGTTTGGAGCAGTCTACCGGACTGTTCTTCGAGATGGTCATCCAGTTGCCATCAAGAAGCTTACTGTCTCAAGTCTGGTCAAGTCCCAAGAAGATTTTGAAAGGGAAGTTAAGAAACTGGGAAAGATCCGGCACCAGAATCTTGTGGCACTTGAAGGGTATTACTGGACTCCATCATTACAGCTCCTAATATATGAATTCATCTCTGGTGGAAGTTTCTTGGCTCACTTGCACCAAATGAGCATAATCCATTACAATCTAAAATCAAGTAACGTCCTCATCGACCCCTCAGGCGAACCTAAGGTGGCAGATTTTGGCCTAGCCAGGCTGTTGCCAATGCTAGATCGATACGTTCTAAGCAGCAAGATTCAGAGTGCACTAGGCTACATGGCACCTGAGTTTGCATGCAGGACAGTGAAGATAACTGAGAAGTGCGACGTTTATGGGTTCGGGGTTTTGGTTCTGGAAGTGGTTACTGGGAAGAGGCCAGTCGAATACATGGAGGATGATGTGGTGGTGCTCTGTGATATGGTCAGAGGAGCATTGGAAGAAGGTAAGGTGGAGGAATGTGTTGATGGGAGACTCCAAGGAAAATTCCCAGCTGAGGAGGCAATTCCTGTGATGAAGTTAGGCTTAATTTGCACTTCACAGGTGCCATCAAATCGGCCAGACATGGCAGAGGTGGTAAATATATTGGAACTGATCAGATGCCCTTCAGAAGGTCAAGAGGACCTCTCAGCTCCAATTGGTGTTGAATCTATCTGCTCATTGACTCTATATATCTTCTTCCAGCAGAAAAGACAATGTAATCCAAGAATAAAAATCCCTGTTTTACTTGTATTTTTCCCAAGTGATGGAAGGGCAGAGTTGGGTTCAACACTCCTGATTAAGAATGGTTGTCCTATTTACCAAAAACAGTTGTCTCTAATGATACAAAAGTTGAAGGCATGTTAG 2544 45.48 MAYLLGVLLALLVVAPSCVKSLNPSLNDDVLGLIVFKADIQDPNSKLASWNEDDDSPCNWVGVKCNPRSNRVTDLVLDGFSLSGKIGRGLLQLHVGSCSTLAAIDFSSNQFSGPLPSGIWSLNGLRSLDLSDNLLEGDIPKGIDSLYNLRAINLSKNRFSGPLPDGIGGCLLLRLIDFSENSLSGSLPGTMQKLTLCNYMNLHGNSFEGEVPEWIGEMKSLETLDLSANKFSGRVPTSIGNLKSLKLLFLNISRNSLVGAIPASIGDLKALDVLDLSENQLNGSIPLEIGGAFSLKDLRLKNNFLAGKIPVSLENCSSLTTLILSHNNLSGPIPMGISKLSNLENVDLSLNKLTGSLPKQLANLPHLISFNISHNQLQGELPAGGFFNTISPSSVSGNPSLCGSAANKSCPAVLPKPIVLNPNSSSDTTAGAFPRSLAHKKIILSISALIAIGAAAVIVIGVIAITVLNLRVRSSASRSAAALALSGGDDYSHSPTTDANSGKLVMFSGDPDFSMGAHALLNKDCELGRGGFGAVYRTVLRDGHPVAIKKLTVSSLVKSQEDFEREVKKLGKIRHQNLVALEGYYWTPSLQLLIYEFISGGSFLAHLHQMSIIHYNLKSSNVLIDPSGEPKVADFGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGKVEECVDGRLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGQEDLSAPIGVESICSLTLYIFFQQKRQCNPRIKIPVLLVFFPSDGRAELGSTLLIKNGCPIYQKQLSLMIQKLKAC* 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1641323 1645980 - Vvi13g174 Vvi13g174 773960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g174 847 Gene3D Ribonuclease Inhibitor 287 412 IPR032675 -
Vvi13g174 847 Gene3D Ribonuclease Inhibitor 181 286 IPR032675 -
Vvi13g174 847 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Vvi13g174 847 Gene3D Ribonuclease Inhibitor 26 180 IPR032675 -
Vvi13g174 847 Gene3D Transferase(Phosphotransferase) domain 1 596 776 - -
Vvi13g174 847 ProSitePatterns Protein kinases ATP-binding region signature. 527 550 IPR017441 GO:0005524
Vvi13g174 847 ProSiteProfiles Protein kinase domain profile. 521 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g174 847 Gene3D Phosphorylase Kinase; domain 1 516 595 - -
Vvi13g174 847 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 96 248 - -
Vvi13g174 847 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 4 94 - -
Vvi13g174 847 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 249 608 - -
Vvi13g174 847 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 604 774 - -
Vvi13g174 847 SMART LRR_typ_2 122 145 IPR003591 -
Vvi13g174 847 SMART LRR_typ_2 340 363 IPR003591 -
Vvi13g174 847 SMART LRR_typ_2 218 242 IPR003591 -
Vvi13g174 847 SMART LRR_typ_2 268 292 IPR003591 -
Vvi13g174 847 SMART LRR_typ_2 146 170 IPR003591 -
Vvi13g174 847 SMART LRR_typ_2 364 388 IPR003591 -
Vvi13g174 847 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 604 774 - -
Vvi13g174 847 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 96 248 - -
Vvi13g174 847 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 94 - -
Vvi13g174 847 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 249 608 - -
Vvi13g174 847 SUPERFAMILY Protein kinase-like (PK-like) 525 765 IPR011009 -
Vvi13g174 847 SUPERFAMILY L domain-like 42 437 - -
Vvi13g174 847 Pfam Protein kinase domain 524 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g174 847 Pfam Protein kinase domain 604 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g397 Vvi13g174 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76158 PF00069 Pkinase 2.20E-20 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g174 - - vvi:100257029 1058.51