Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g176 ATGGTTATGGATTATGGGGATGAACCCCATGTTCTTGCCGTCGACGATAATCTCATTGACCGCAAGCTCATTGAGAAATTGCTCAAGAACTTCTCTTGCAGAGTGACCACTGCAGAAAATGGGCTGAGGGCTTTGGAGTATCTGGGTTTGGGTGATAATCAACAGACCAGCCACAAAGCCAGTGTTTCAAAGGTGAATTTGATAATTACAGACTACTGTATGCCAGGAATGACAGGCTATGAGCTGCTCAAGAGAGTCAAGCAGTCATCCATCTTGAAGGAGGTTCCAGTTGTGATAATGTCATCAGAAAACATCCCAACTCGAATCAATAAGTGCCTGGAGGAAGGAGCTCAAATGTTCATGCTAAAGCCCCTCAAGCAGTCTGATGTGAAGAAACTAAGATGTTACTTGAAGCACAGAAGCTAA 426 44.13 MVMDYGDEPHVLAVDDNLIDRKLIEKLLKNFSCRVTTAENGLRALEYLGLGDNQQTSHKASVSKVNLIITDYCMPGMTGYELLKRVKQSSILKEVPVVIMSSENIPTRINKCLEEGAQMFMLKPLKQSDVKKLRCYLKHRS* 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1666119 1667557 + Vvi13g176 Vvi13g176 773962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g176 141 CDD REC_typeA_ARR 11 133 - -
Vvi13g176 141 SUPERFAMILY CheY-like 8 131 IPR011006 -
Vvi13g176 141 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 138 IPR045279 GO:0009736
Vvi13g176 141 Gene3D - 10 141 - -
Vvi13g176 141 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE 6 138 - -
Vvi13g176 141 SMART REC_2 9 134 IPR001789 GO:0000160
Vvi13g176 141 Pfam Response regulator receiver domain 11 132 IPR001789 GO:0000160
Vvi13g176 141 ProSiteProfiles Response regulatory domain profile. 10 138 IPR001789 GO:0000160
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13861 PF00072 Response_reg 3.20E-21 CL0304 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g176 K14492 - vvi:100246693 282.722