Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g19 ATGGCTGCTGTTAGTATGGGCCACCATGGCCCAACTATGCCCATATTTCATGGGCTCTGGCCTGCTCGACGATTTTTTGCTTGGTCCCGCTTTCTTTTTGTCATCGACGTCTACATTTCTCCCCCTCCGGTCACTGTGACTGACTATCCGTTGCAATTTCCGATGACATCGTCCGGAGTGTCTAGTTATCGAGATCGGACGTCGGAATTTCGATCTCTCTCTGGAAGAATGAAGAAGATCGGTGGAATGGCCGTTGCAAATCATGCTGAAGATGATCCAGCAACATCGAGATCATTGGCTTCGGCATCATCACGATCCGAATTCAACAAAAAGGCTTCACGAATTGGGTTAGGGATCCACGAGGCATGTCTCAAGATCTCCAGGCTTGCCAAATTGGCAAAAAAGTCATCAATGTTCAATGACCCAATCATGGAAATACAGGAACTAACTGCCTTGATAAAAGATGATATTACTGCACTCAATATAGCAGTTTCAGATTTGCAAACCCTTCAAAACCTTGAGATAGCTGATGGAAATTACTCTGATGATAGAGTCGTCCATTCAAATACTGTTTGTGATGACTTAAAGAACAAACTTATGGGGGCTACTAAACAGCTCCAGGATGTGTTAACAACTAGAACAGAGAATATCAAGGCTCATGAGAATAGGAAGCAGATTTTTTCCACAAATGTATCCAGAGAAAACCCTTTTCAGCAGCATGCAAAGACTGTGACTGAGCCACCTCCTTGGTCAAGTTTATCTAAGACATCTGGGAATTTGCAACCATCAGTGTTGTCGTCAAATGGAGTTCAAGTTGGCAACCAACTGAGACGAAGGTTAGCTGTGGACAACACACCATCCAACCATATGGAAGTGTCCATGTTACAGCAGGTGGTTCCACGACAGGAAAATTATACACAAAGCCGGGCATTGGCTCTTCAGAATGTCGAATCCACAATTTCAGAACTAAGCGGAATCTTTACTCATCTGGCTACAATGGTTGCACAGCAAGGGGAATTGGCGATCAGGATTGATGATAACATGGATGAGTCGTTGGCAAATGTTGAAGGTGCTCAAAGTGCTCTATTGAAGCATCTAAATCAAATATCATCGAACAGATGGCTTTTACTCAAGATCTTTGCCATATTAATATTTTTCCTGATGATATTCATCTTCTTTGTGGTTTAA 1188 42.93 MAAVSMGHHGPTMPIFHGLWPARRFFAWSRFLFVIDVYISPPPVTVTDYPLQFPMTSSGVSSYRDRTSEFRSLSGRMKKIGGMAVANHAEDDPATSRSLASASSRSEFNKKASRIGLGIHEACLKISRLAKLAKKSSMFNDPIMEIQELTALIKDDITALNIAVSDLQTLQNLEIADGNYSDDRVVHSNTVCDDLKNKLMGATKQLQDVLTTRTENIKAHENRKQIFSTNVSRENPFQQHAKTVTEPPPWSSLSKTSGNLQPSVLSSNGVQVGNQLRRRLAVDNTPSNHMEVSMLQQVVPRQENYTQSRALALQNVESTISELSGIFTHLATMVAQQGELAIRIDDNMDESLANVEGAQSALLKHLNQISSNRWLLLKIFAILIFFLMIFIFFVV* 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 195174 213805 + Vvi13g19 Vvi13g19 773805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g19 395 MobiDBLite consensus disorder prediction 85 105 - -
Vvi13g19 395 MobiDBLite consensus disorder prediction 236 261 - -
Vvi13g19 395 SUPERFAMILY t-snare proteins 105 358 IPR010989 GO:0016020|GO:0016192
Vvi13g19 395 PANTHER SYNTAXIN-31 55 394 - -
Vvi13g19 395 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 62 73 IPR021538 -
Vvi13g19 395 ProSitePatterns Syntaxin / epimorphin family signature. 309 348 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi13g19 395 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 303 365 IPR000727 -
Vvi13g19 395 SMART tSNARE_6 298 365 IPR000727 -
Vvi13g19 395 Gene3D - 101 358 - -
Vvi13g19 395 CDD SNARE_syntaxin5 307 381 - -
Vvi13g19 395 Pfam SNARE domain 340 391 IPR000727 -
Vvi13g19 395 PANTHER SYNTAXIN 55 394 IPR045242 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g19 K08490 - vvi:100244928 731.095