Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g197 ATGAGGAGTTTTGAGATGAATGTTAACGGTCCTTGGACCAAAGGGTCAGCCGAACTTAACCACCATGCACAAGATGAGCAAAAAAATATAAGGGACAAAGTTGTGGGTGAGGGCCATGGCCTATCCGAGGAAGATGAATCGAGGATTAATGAGGATGTGGAAGATCTGAATGATGGGCGAATAGGGTCAGTCCAGGCAGTCCAGGGCGTTCTGCATGGACCACAGCAACAGCCTCAAGGGCCTATTGTTCGTTGGGAAAGGTTTCTCCCCCTGAGGTCTTTGAAGGTTCTACTGGTGGAAAATGACAATTCAACTCGCCAGGTTGTCAGTGCATTACTTCGAAATTGCAGTTATGAAGTTACTGCTGTAGCAAATGGTGTACAAGCATGGAGCATCTTAGATGATCTAACCAATCATGTAGACCTTGTTCTGGCCGAGGTAGCATTGCCTTCTTTATCAGGCATTGGCCTTCTTTGCAAGATTATGAACCATAAAGCATGCAAGAATATCCCTGTGATTATGATGTCATCCCATGATTCTGTGGGCATAGTCTTTAAATGTTTGTCAAAGGGTGCAGTTGACTTTTTTGTGAAGCCTATTCGAAAAAATGAGCTTAAAAACCTTTGGCAGCATGTGTGGAGGAAATTCCACAGGTTTAGCGGTAGTGAAAGTGAAAGTGAAAGTGGTATACGGACTAAAAAATCTGCAAAGTCAAAGAGTGTTGCTGGGTCAGACAACAACACTGGCAGCAATGATGAGGATAATGGAAGTATTGGTTTGAATGTTAGGGATGGAAGTGACAATGGAAGTGGTACTCAGAGTTCTTGGACTAAAATGGCAGTAGAAGTTGACAGCCCCAAACCAATGCAACCATGGGACCAATCGGCTGATCCTCCAGATAGCACTTGTGCACAGGTTACCCAATCATGGCCTGAAGCATTTGGCAACTACCAGGTGCCCATGACTTCCTCCAAGGATTACCAAGAACAAGATGATGAACTTGATAATGTTGAAATGGGCAAAGACTTGAAGATAGGAGTACCTAGAAACTCAAATTTACAGCTTCAAGATGATGTAGTAGGCGCTAATAAGGATAAATTTCATGAATTGACCTTGAAGAAAGATGATGAAAAATTAGAGAACAGACAAATGGACCTCAACAGTAACAAGCCAAATGATGAATTGGATAAAGAAGCTGTCGATCTGATGAGTGTCATTGCCAACAATACCAATCCTCAGAAAAAAAGTATGGGCTTCAAAACTCCAAGTGGCCTCTCTGAGGTCCCTGAAACTAAAGATAAGGCCATGTACGACAAAAAGGAAATACCTTCCCTTGAGCTCAGTTTGAAGAGGCTGAGAGATACTGGAGGTACTGATACCAATCCCCATGACCAAATCATTTGGAGACATTCCGACCTTTCAGCCTTTTCAAGGTATAATTCTGCTTCAACTGCTATTCAAGCTTCAACTGGCAATGTAGGTAGCTGTTCTCCACTTGATAACAGCTCAGAAGCAGCAAAGACAGAATCCATGCAAAATTTCCAATCTAATTCGAATGGCACTCCTCCCAACCAGAGTTCCAATGGCAGTAGCAACAACAACATGGGCTCTACTACTGATGATTTTTACACCAAGCCAGCAGCATTCGATGATAAACCAGATTCCAAATCTGCAGTCAAACATCTCCAGCACTCTGCTTTCCAACCAGTACAGAATACAATTTTGGCCGATTTTGCAAATGCCAATACAATTTTGGCCCACCCAAGTGCCATGCCCCCACAGGTCCAAATCCAGAACCACCATTACTATTACCACCACCATGTCCATAATATATCACAGCAACAGATACGCATCCATGATGATTTGGCTTTGACCAACATGGCAAAATCTGCTCCACAGTGTGGGTCATCCAATGTGTTGAATGCGCCTGTTGAAGGTTATGCCTGTAATCACAGTTTGAATGGGAGTGCATCAGGAAGTAACCATGGTAGCAACGGCCAAAATGGGAGTACCACTGCTGTAAATGCCCAAGGAACAAATATGGAAAGTGATGATGGAATAGCTGGAAAAGGTGGAGCAGGTGGAGGAAGTGGGAGTGGAAGTGGAAGCAGGAGCGGAGTAGATCAAAACCAATATGCACAAAGAGAGGCTGCATTAAACAAATTCCGCCAGAAAAGGAAAGAACGATGCTTTGAGAAAAAGGTACGATACCAAAGCAGGAAGAGACTGGCCGAACAGAGACCACGCATTCGAGGACAATTTGTTCGTAGGGTATTCCATGATATTAACAGCGAGGATGCAGACAGCTAA 2310 43.68 MRSFEMNVNGPWTKGSAELNHHAQDEQKNIRDKVVGEGHGLSEEDESRINEDVEDLNDGRIGSVQAVQGVLHGPQQQPQGPIVRWERFLPLRSLKVLLVENDNSTRQVVSALLRNCSYEVTAVANGVQAWSILDDLTNHVDLVLAEVALPSLSGIGLLCKIMNHKACKNIPVIMMSSHDSVGIVFKCLSKGAVDFFVKPIRKNELKNLWQHVWRKFHRFSGSESESESGIRTKKSAKSKSVAGSDNNTGSNDEDNGSIGLNVRDGSDNGSGTQSSWTKMAVEVDSPKPMQPWDQSADPPDSTCAQVTQSWPEAFGNYQVPMTSSKDYQEQDDELDNVEMGKDLKIGVPRNSNLQLQDDVVGANKDKFHELTLKKDDEKLENRQMDLNSNKPNDELDKEAVDLMSVIANNTNPQKKSMGFKTPSGLSEVPETKDKAMYDKKEIPSLELSLKRLRDTGGTDTNPHDQIIWRHSDLSAFSRYNSASTAIQASTGNVGSCSPLDNSSEAAKTESMQNFQSNSNGTPPNQSSNGSSNNNMGSTTDDFYTKPAAFDDKPDSKSAVKHLQHSAFQPVQNTILADFANANTILAHPSAMPPQVQIQNHHYYYHHHVHNISQQQIRIHDDLALTNMAKSAPQCGSSNVLNAPVEGYACNHSLNGSASGSNHGSNGQNGSTTAVNAQGTNMESDDGIAGKGGAGGGSGSGSGSRSGVDQNQYAQREAALNKFRQKRKERCFEKKVRYQSRKRLAEQRPRIRGQFVRRVFHDINSEDADS* 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1858218 1891486 + Vvi13g197 Vvi13g197 773983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g197 769 MobiDBLite consensus disorder prediction 489 541 - -
Vvi13g197 769 ProSiteProfiles CCT domain profile. 715 757 IPR010402 GO:0005515
Vvi13g197 769 MobiDBLite consensus disorder prediction 658 710 - -
Vvi13g197 769 Gene3D - 93 255 - -
Vvi13g197 769 SUPERFAMILY CheY-like 92 220 IPR011006 -
Vvi13g197 769 CDD psREC_PRR 96 199 - -
Vvi13g197 769 SMART REC_2 94 209 IPR001789 GO:0000160
Vvi13g197 769 MobiDBLite consensus disorder prediction 224 305 - -
Vvi13g197 769 ProSiteProfiles Response regulatory domain profile. 95 213 IPR001789 GO:0000160
Vvi13g197 769 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 30 747 - -
Vvi13g197 769 MobiDBLite consensus disorder prediction 489 555 - -
Vvi13g197 769 MobiDBLite consensus disorder prediction 411 431 - -
Vvi13g197 769 MobiDBLite consensus disorder prediction 658 682 - -
Vvi13g197 769 MobiDBLite consensus disorder prediction 235 280 - -
Vvi13g197 769 Pfam CCT motif 715 757 IPR010402 GO:0005515
Vvi13g197 769 Pfam Response regulator receiver domain 96 207 IPR001789 GO:0000160
Vvi13g197 769 PANTHER TWO-COMPONENT RESPONSE REGULATOR 30 747 IPR045279 GO:0009736
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g673 Vvi13g197 ECH
Vvi6g346 Vvi13g197 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13866 PF00072 Response_reg 3.90E-19 CL0304 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g197 K12129 - vvi:100256937 1421.37