Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g199 ATGGGTTGTTTTCCCTGCGCTGGAAAATCAAACAAAAAAGGGAAGAAGAATCAGGAAAAGAACTCCAAGGATCAGATCCCATCCACTTCAGAAAGGTTGAAGGTTAATTCGTCAGTAGATGGAAGGAAGGATGCCTCCAAGGATGGAGGCTCAGATCACATTGCAGCACATACATTCACATTTCGTGAATTGGCAGCTGCAACAAAGAATTTCAGAGCAGAATGTCTTTTGGGTGAAGGGGGTTTTGGCAGAGTCTATAAAGGGCGATTGGAGAGTACTAATAAGATCGTAGCTATCAAGCAACTTGATCGTAATGGACTCCAAGGGAACCGAGAATTCCTTGTCGAAGTATTGATGTTAAGCCTGCTGCACCACCCTAACCTTGTTAACTTAATTGGTTATTGTGCTGATGGAGATCAGAGACTTTTGGTTTACGAATACATGGCATTAGGATCTTTGGAAGACCATCTACATGACCTTCCACCTGATAAAAAACGACTCGACTGGAATACAAGAATGAAAATAGCTGCGGGTGCCGCAAAAGGCTTGGAGTATTTGCATGACAAAGCAAGCCCTCCTGTCATATATCGTGATTTGCAATGCTCAAACATTTTACTTGGTGAAGGGTATCATCCAAAGTTATCGGATTTTGGCTTGGCAAAATTGGGTCCAGTTGGGGATAAGACCCATGTGTCAACTAGAGTGATGGGGACCTATGGATATTGTGCACCAGAATATGCAATGACAGGTCAACTTACGTTAAAATCAGATGTTTATAGCTTTGGTGTTGTTCTTCTGGAAATCATCACTGGAAGAAAAGCAATTGACAATTCAAAAGCTGCTGGGGAACACAATTTGGTTGCATGGGCACGGCCTTTATTCAAGGATAGAAGGAAATTCTCACAGATGGCTGACCCAATGCTCCATGGCCAATACCCATTAAGAGGTTTGTACCAGGCTCTTGCTGTGGCTGCAATGTGTGTTCAGGAGCAGCCTAACATGCGGCCCCTTATAGCAGATGTAGTCACTGCCCTGACCTATCTTGCTTCCCAAAAATATGACCCTGAAACCCAGCCGGTCCAAAGCTCCCGGATGGGCTCTTCCACCCCTAGATCCAGAAGGGAACTGTGA 1131 44.47 MGCFPCAGKSNKKGKKNQEKNSKDQIPSTSERLKVNSSVDGRKDASKDGGSDHIAAHTFTFRELAAATKNFRAECLLGEGGFGRVYKGRLESTNKIVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMALGSLEDHLHDLPPDKKRLDWNTRMKIAAGAAKGLEYLHDKASPPVIYRDLQCSNILLGEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKAAGEHNLVAWARPLFKDRRKFSQMADPMLHGQYPLRGLYQALAVAAMCVQEQPNMRPLIADVVTALTYLASQKYDPETQPVQSSRMGSSTPRSRREL* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1906487 1911827 + Vvi13g199 Vvi13g199 773985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g199 376 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 13 375 - -
Vvi13g199 376 MobiDBLite consensus disorder prediction 12 27 - -
Vvi13g199 376 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Vvi13g199 376 MobiDBLite consensus disorder prediction 36 50 - -
Vvi13g199 376 MobiDBLite consensus disorder prediction 1 50 - -
Vvi13g199 376 Gene3D Transferase(Phosphotransferase) domain 1 148 367 - -
Vvi13g199 376 CDD STKc_IRAK 77 346 - -
Vvi13g199 376 PANTHER OS07G0668900 PROTEIN 13 375 - -
Vvi13g199 376 Pfam Protein tyrosine and serine/threonine kinase 75 343 IPR001245 GO:0004672|GO:0006468
Vvi13g199 376 ProSiteProfiles Protein kinase domain profile. 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi13g199 376 SUPERFAMILY Protein kinase-like (PK-like) 57 363 IPR011009 -
Vvi13g199 376 MobiDBLite consensus disorder prediction 355 369 - -
Vvi13g199 376 Gene3D Phosphorylase Kinase; domain 1 43 147 - -
Vvi13g199 376 MobiDBLite consensus disorder prediction 355 376 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g348 Vvi13g199 ECH
Vvi8g667 Vvi13g199 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76160 PF07714 PK_Tyr_Ser-Thr 1.20E-46 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g199 - - vvi:100250154 750.355