Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g203 ATGGTATCTAATTCACTGATGAGGATTGTGGCACCATGTTGGAGGCCTTCCATAGAAGGTGAAAATTCTGGTAGAGGGGATGTTGCAGGCCGGGTTGATGGTTTATTGTGGTATAAAGATTCAGGGCGCCATGTTAATGGGGACTTTTCTATGGCAGTAATTCAAGCTAATAATGTATTGGAAGATCATAGCAGACTTGATTCGGGGCCGCTGAGCTCACTTGATTCAGGTCCACAAGGAACATTTGTTGGAATTTATGATGGCCATGGAGGTCCTGAAGCTTCCCGGTTTGTCAACAGTAGACTATTTGACAATCTTAAGAAATTCACATCAGAGAATCAGGGAATGTCAGAAGATGTTATCACCAAAGCATTTTTGGCGACAGAGGACGAATTCCTCTCTCTTGTAAAGAAGCAGTGGCTAAGTAAGCCACAAATTGCTTCTGCGGGTTCATGTTGTTTAGTTGGTATAATATGTAGTGGACTGCTTTACATTGCAAATGCAGGAGACTCTCGAGTGGTGTTAGGAAGATTGGAGAAAGCCTTCAGTGAGGTAAAAGCCGTTCAGTTATCTTCTGAGCACAATGCAAATTTTGAATCTGTGAGAGAGGAGTTGCGCATGTTGCATCCTGATGATCCACAGATAGTGGTTTTAAAGCACAAGGTTTGGCGTGTGAAGGGTATAATACAGGTTTCAAGATCCATAGGTGATGCTTACCTGAAGAATGCTGAATTCAACAGAGAGCCTCTATTGCCAAAGTTTAGACTGGATGAGCCCTTCCACAAGCCAATCCTTAAAGCTGAGCCATCGGTTCTAGTGCAGAGACTTCACCCTGAAGACCAGTTTCTTATATTTGCATCTGATGGGCTATGGGAGAACCTTAGTAATCAGGAGGCAGTTGACATTGTCAACAACAGTCCACGTAATGGGATTGCAAGGAAACTTGTCAAAGCTGCATTACAGGAAGCGGCAAAGAAAAGGGAGATGAGATACTCAGACCTGAAAAAGATCGAGCGAGGTGTGAGGAGACATTTTCACGATGATATCACTGTTGTTGTATTGTTTCTTGACTACAGTCTGATCAGTCGCAACTCCAATCGTGGACCTTCACTTTCAATCATAGCAGGGGGAGGTGTCTTTGCAAATGGCAGCACCTAG 1158 43.7 MVSNSLMRIVAPCWRPSIEGENSGRGDVAGRVDGLLWYKDSGRHVNGDFSMAVIQANNVLEDHSRLDSGPLSSLDSGPQGTFVGIYDGHGGPEASRFVNSRLFDNLKKFTSENQGMSEDVITKAFLATEDEFLSLVKKQWLSKPQIASAGSCCLVGIICSGLLYIANAGDSRVVLGRLEKAFSEVKAVQLSSEHNANFESVREELRMLHPDDPQIVVLKHKVWRVKGIIQVSRSIGDAYLKNAEFNREPLLPKFRLDEPFHKPILKAEPSVLVQRLHPEDQFLIFASDGLWENLSNQEAVDIVNNSPRNGIARKLVKAALQEAAKKREMRYSDLKKIERGVRRHFHDDITVVVLFLDYSLISRNSNRGPSLSIIAGGGVFANGST* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1958225 1964689 - Vvi13g203 Vvi13g203 773989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g203 385 PANTHER ALPHABET, ISOFORM E-RELATED 8 378 - -
Vvi13g203 385 SUPERFAMILY PP2C-like 43 357 IPR036457 -
Vvi13g203 385 CDD PP2Cc 77 356 IPR001932 -
Vvi13g203 385 ProSiteProfiles PPM-type phosphatase domain profile. 48 356 IPR001932 -
Vvi13g203 385 Pfam Protein phosphatase 2C 68 325 IPR001932 -
Vvi13g203 385 ProSitePatterns PPM-type phosphatase domain signature. 82 90 IPR000222 GO:0043169
Vvi13g203 385 Gene3D - 38 367 IPR036457 -
Vvi13g203 385 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 8 378 - -
Vvi13g203 385 SMART PP2C_4 22 354 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g660 Vvi13g203 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g203 K01102 - vvi:100262161 756.903