Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g225 ATGCCGAACCGCCCTGTTAGGATTATTCAGCTGCAGCATCCCACGACGACGTCGCTTTCGAGTTCTTCGTCGTCGTCGTCGTCGTGGTGGTCTGTGCTTTCGAGATGGCGGTCCAAGGTCAATGCTATGAGCTTCACTGACTGGACCGACGTTTTAGTCCCTTGCTCCAGATGGATTCGAACCTACCGGTGGAGGGATTACCTCCAGATCGATCTCGCCGCCGGGTTAACCGTGGGCGTCATGCTCGTTCCTCAGGCAATGTCTTATGCAAGGTTAGCTGGGCTTGAACCAATATATGGACTTTACTCCAGTTTTGTGCCTATATTTGTGTATGCAATATTTGGGTCATCTCGCCAGCTTGCAATCGGTCCTGTAGCATTGGTTTCACTACTGGTCTCTAATGTATTAAGTAAAATTGTTGATTCATCTGATGAACTATACACGGAACTAGCAATACTTTTGGCGCTTATGGTTGGCATAATGGAATGCATAATGGGGCTCCTGAGGCTTGGATGGCTTATTCGTTTCATCAGTCACTCTGTGATTTCTGGGTTTACGACAGCTTCAGCAATTGTGATTGCCTTATCTCAAGCAAAGTATTTCCTGGGATATGATATAGATCGAACTAGCAAAATTGTGCCTCTGATTAAAAGTATAATAGCTGGAGCAGATGAGTTCTCCTGGCCTCCTTTCGTAATGGGATCCATCATTCTTGCAATTCTTCTGGTTATGAAGCACTTGGGAAAAACAAGGAAATATTTGCGGTTCCTTCGAGCATCAGGTCCCCTCACAGGAGTTGTCTTGGGCACTGTTTTTGTGAAAATATTTCATCCATCTTCAATTTCTGTGGTTGGAGAAATACCTCAGGGCCTCCCAAAATTTTCTGTTCCTAAAAGTTTTGGGTATGCAAAGGATTTGATTCCGACTGCACTTCTTATTACTGGTGTAGCTATATTGGAATCTGTGGGGATTGCCAAAGCATTGGCAGCGAAGAACGGGTATGAGCTGGATTCGAATCAAGAGTTGTTTGGTCTTGGTGTTGCCAATATCTGTGGTTCATTCTTTTCAGCATACCCCACGACAGGCTCCTTTTCTAGGTCGGCTGTAAATCATGAAAGCGGAGCAAAAACTGGATTATCTGGAATTGTTACAGGAATCATAATAGGCTGTGCTCTTTTGTTTCTGACTCCATTATTTACAGATATACCCCAGTGTGCTCTGGCTGCCATCGTGGTCTCAGCTGTAATGGGTTTGGTGGATTATGATGAAGCTATTTTTTTATGGCGTGTAGATAAGAAAGATTTTCTTCTTTGGACCCTTACCAGCACTATGACATTGTTCCTTGGTATTGAGATTGGTGTCCTTGTTGGGGTTGGTGCTTCGCTTGCTTTTGTCATCCATGAGTCAGCAAATCCTCGTCTTGCTTTCTTGGGGCGTCTTCCAGGCACCACTGTTTATAGAAACATTCAGCAATATCCAGAAGCATATACATACCATGGGATTGTGATTGTTCGGATTGATGCACCCATTTATTTTGCAAATATAAGTCACATAAAAGAAAGGCTACAGGAATATGAAATGAAAAATGACGGATCTACAAGACGTGGACCAGAAGTTGAAAGTGTTTATTTTGTGATTCTAGAGATGTCACCTGTTACATATGTAGACTCCAGTGCCGTTCAAGCTTTGAAGGACTTGTATCACGAGTACAAATCACGGGATATCCAGATTGCCATTTCCAATCCAAACCGTGAAGTTCTGCTGACCCTAGCAAAGGCCAATTTGGTGGAGCTGATTGGTAAGGAGTGGTACTTTGTAAGGGTGCATGACGCTGTTCAAGTTTGCCTTCAACATGTGCAAAGCATAAATGAAGGAGCTAAGACAGCAGAGCCACTAGAGGAGGATAAACCGAGCCTCTTCCAGCGGTTGCTTAAACAGAGACGGGAGGACTTCTCAAAGGCCGAATTGGAGTCCGGAGATCAAGCTCCTTCGACTCCCGCTGATTCAGATTCGCAATTGGAGCCATTGTTGTCTCGCAAGTCTTGA 2046 44.43 MPNRPVRIIQLQHPTTTSLSSSSSSSSSWWSVLSRWRSKVNAMSFTDWTDVLVPCSRWIRTYRWRDYLQIDLAAGLTVGVMLVPQAMSYARLAGLEPIYGLYSSFVPIFVYAIFGSSRQLAIGPVALVSLLVSNVLSKIVDSSDELYTELAILLALMVGIMECIMGLLRLGWLIRFISHSVISGFTTASAIVIALSQAKYFLGYDIDRTSKIVPLIKSIIAGADEFSWPPFVMGSIILAILLVMKHLGKTRKYLRFLRASGPLTGVVLGTVFVKIFHPSSISVVGEIPQGLPKFSVPKSFGYAKDLIPTALLITGVAILESVGIAKALAAKNGYELDSNQELFGLGVANICGSFFSAYPTTGSFSRSAVNHESGAKTGLSGIVTGIIIGCALLFLTPLFTDIPQCALAAIVVSAVMGLVDYDEAIFLWRVDKKDFLLWTLTSTMTLFLGIEIGVLVGVGASLAFVIHESANPRLAFLGRLPGTTVYRNIQQYPEAYTYHGIVIVRIDAPIYFANISHIKERLQEYEMKNDGSTRRGPEVESVYFVILEMSPVTYVDSSAVQALKDLYHEYKSRDIQIAISNPNREVLLTLAKANLVELIGKEWYFVRVHDAVQVCLQHVQSINEGAKTAEPLEEDKPSLFQRLLKQRREDFSKAELESGDQAPSTPADSDSQLEPLLSRKS* 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2221347 2235986 - Vvi13g225 Vvi13g225 774011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g225 681 Gene3D STAS domain 471 619 IPR036513 -
Vvi13g225 681 Pfam Sulfate permease family 68 441 IPR011547 GO:0016021
Vvi13g225 681 MobiDBLite consensus disorder prediction 652 681 - -
Vvi13g225 681 SUPERFAMILY SpoIIaa-like 493 615 IPR036513 -
Vvi13g225 681 PANTHER SULFATE TRANSPORTER 4.1-RELATED 23 651 - -
Vvi13g225 681 PANTHER SULFATE TRANSPORTER 23 651 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vvi13g225 681 TIGRFAM sulP: sulfate permease 54 611 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vvi13g225 681 ProSitePatterns SLC26A transporters signature. 97 118 IPR018045 GO:0008271|GO:0008272
Vvi13g225 681 CDD STAS_SulP_like_sulfate_transporter 492 608 - -
Vvi13g225 681 MobiDBLite consensus disorder prediction 658 674 - -
Vvi13g225 681 Pfam STAS domain 492 611 IPR002645 -
Vvi13g225 681 ProSiteProfiles STAS domain profile. 491 615 IPR002645 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g225 K18059 - vvi:100262061 1292.72