Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g228 ATGGTGGGAAAAGAGGATGGTTCTCGTGTTCCGTACCAGGTTGCTGGAAATCGGAAAACGTTCTGGCGGTCGGCGTCCTGGTCTTCGTCTCGGACGGGGCTGAGAAACCCTGAGTCTGAAGAAAAGGATTGCTCAGATCCAAACGGTGGTATTGGGAATAATAGTGGCCAAAACCGGCGGTTTCCGGCTCCATTAACCCCACGATCTCAGCAAAACTGTAAGGCCCGGGCGTGCTTGCCACCACTGCAGCCATTGTCCATTGCTCGCAGGAGCTTGGATGAGTGGCCAAAGGCAAGTTCTGATGATGTTGGGGAGTGGCCTCAACCACCCACCCCAAGTGGGAGAGATATGAATAAGGGTGGAGATAGGCTGAAGCTTGATTTGTCTGCGATTCAGAAAAACCCGGATAAGAATGGTGGGCTTGTGAGGAGGGATAAGATTGCATTCTTTGATAAAGAGTGCTCTAAGGTTGCTGAACATATATATCTTGGGGGAGATGCGGATAGTCCATCTGAAGACATCACCAGTATACTTTATGATGTTTTTGACTACTTTGAGGATGTTAGAGAACAGGGGGGAAGGGTTTTTGTTCATTGTTGCCAAGGGGTGTCTCGATCCACTTCGCTTGTGATTGCATATCTTATGTGGAGAGAAGGGCAGAGTTTTGAAGATGCATTTCAGTATGTGAAAGCAGCTAGGGGAATTGCTGATCCAAATATGGGGTTTGCTTGCCAGTTGTTACAGTGTCAAAAAAGGGTCCATGCCTTTCCTCTTAGTCCAAGTTCATTACTGAGGATGTATAGAATTGCCCCACACTCTCCATATGATCCTTTGCATCTTGTTCCAAAAATGTTGAATGATCCTTCACCATCTGCTCTTGATTCTAGGGGTGCATTTATTGTACATGTACCTTCTGCAATCTATGTTTGGATTGGTAAAAATTGTGAGTTCATAATGGAAAGGGATGCCAGAGCTGCGGTTTGTCAGATTGTTCGTTATGAAAGAGTACAGGGGCCAATAACAGTGATCAAGGAAGGAGAAGAACAGTCATACTTCTGGGATGCTTTTTCTAACCTTTTGCCTTTGATGGATAAATCTGTTAATGGGGTGGAGGTTGGGAAATCAATGGTTGATGTTTGCCTTGGTGAGAGAAAAGTGGATTCATATAATGTTGATTATGAGATTTTCAAGAAAGCAATCTCCGGGGGTTTTGTGCCCCCTTTTGCATCATCTGAGACTGAACATGAAACCCACCTTCCTGTAAGAGAAAGCAGTTGGAGTGCGCTGAGGCGTAAGTTTGCCTTTGGCAATATGAAGGAGTTCATTTCGGCTCCCAGGTTATCCTTTCACAGGGTGTTTTCAGATTCTATGTTAATAGTCGAACTTGTTAGTGTTACTTCACAGCATTCTTCTCAATCAGTCTCCCTACCATTTAAAAGATTTCCCGTTTCCCTGGCTGAGCGCAGAGGTAGCTTGTCAAAGTCACTTACACTGCCTGTGTTGACTGATGAAACAAGGTTAAAAAATAATGTTTCAACTTCGGTTTCCTGTCAAGAAGATGCTGTGAGGATAGACGTCAACACTTGCTCTTTTTCTGAACCATGTTCTAGTGTAGAACATGTCTCAGAGTTCAAGAATGGTGCTAGAAATGGAGATGGGAACTCAACTGAACAATGCGAGTTGCGGATATCATCAGGTAGAGTAGCTAGTGATGATTCACATAAGGACATTGGTTTTGTCAGAAATGGTGATGAGACACTGAGAAATGATCCTTTGGAAGGAAGTCAGGATTCAACTGTCTTGACTGGAATGATGGAAGCTCATGGTGACCCAGTACAACCATTAGTATGTTGCTGGCCTAGCTTAGAAAAATTTGCATCCTTTGGTGCAGGTGATCTGGATTCCAAAGCTGCATTTGTTTTCTTCTTTCCAAGTACAGGTTTAGGAAAAGCTGAGGATAGGATTATATATATTTGGGTAGGAAGATCTTTCAATCATGGTAATACCCGGGCTCTACTAGATAGCAGCAGAGAGGTAGGTGATCTAGAAGAGATTGACTGGAACCAAGTTGGTTGTGATGTTCGTTCTCAGCTGGGTCTGCCAGAGGACACTGCCATTAAGATTGTTAAAGAAGATGAAGAGCCAGTAGAATTCTTTGCATTGTTGCATCCATTGTAG 2178 43.99 MVGKEDGSRVPYQVAGNRKTFWRSASWSSSRTGLRNPESEEKDCSDPNGGIGNNSGQNRRFPAPLTPRSQQNCKARACLPPLQPLSIARRSLDEWPKASSDDVGEWPQPPTPSGRDMNKGGDRLKLDLSAIQKNPDKNGGLVRRDKIAFFDKECSKVAEHIYLGGDADSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIVHVPSAIYVWIGKNCEFIMERDARAAVCQIVRYERVQGPITVIKEGEEQSYFWDAFSNLLPLMDKSVNGVEVGKSMVDVCLGERKVDSYNVDYEIFKKAISGGFVPPFASSETEHETHLPVRESSWSALRRKFAFGNMKEFISAPRLSFHRVFSDSMLIVELVSVTSQHSSQSVSLPFKRFPVSLAERRGSLSKSLTLPVLTDETRLKNNVSTSVSCQEDAVRIDVNTCSFSEPCSSVEHVSEFKNGARNGDGNSTEQCELRISSGRVASDDSHKDIGFVRNGDETLRNDPLEGSQDSTVLTGMMEAHGDPVQPLVCCWPSLEKFASFGAGDLDSKAAFVFFFPSTGLGKAEDRIIYIWVGRSFNHGNTRALLDSSREVGDLEEIDWNQVGCDVRSQLGLPEDTAIKIVKEDEEPVEFFALLHPL* 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2278833 2284853 + Vvi13g228 Vvi13g228 774014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g228 725 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 146 280 IPR029021 -
Vvi13g228 725 ProSitePatterns Tyrosine specific protein phosphatases active site. 197 207 IPR016130 GO:0016311|GO:0016791
Vvi13g228 725 Gene3D Protein tyrosine phosphatase superfamily 145 260 IPR029021 -
Vvi13g228 725 MobiDBLite consensus disorder prediction 93 120 - -
Vvi13g228 725 MobiDBLite consensus disorder prediction 21 68 - -
Vvi13g228 725 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 172 233 IPR000387 GO:0016311|GO:0016791
Vvi13g228 725 CDD DSP 168 248 - -
Vvi13g228 725 Gene3D Severin 264 359 IPR029006 -
Vvi13g228 725 SMART dsp_5 153 252 IPR020422 GO:0006470|GO:0008138
Vvi13g228 725 PANTHER MKPA PROTEIN 1 167 - -
Vvi13g228 725 PANTHER MKPA PROTEIN 168 718 - -
Vvi13g228 725 SUPERFAMILY Actin depolymerizing proteins 260 363 - -
Vvi13g228 725 ProSiteProfiles Dual specificity protein phosphatase domain profile. 95 255 IPR020422 GO:0006470|GO:0008138
Vvi13g228 725 Pfam Dual specificity phosphatase, catalytic domain 168 251 IPR000340 GO:0008138|GO:0016311
Vvi13g228 725 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 168 718 - -
Vvi13g228 725 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 167 - -
Vvi13g228 725 MobiDBLite consensus disorder prediction 48 68 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g228 - - vvi:100260475 931.784