Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi13g228 | ATGGTGGGAAAAGAGGATGGTTCTCGTGTTCCGTACCAGGTTGCTGGAAATCGGAAAACGTTCTGGCGGTCGGCGTCCTGGTCTTCGTCTCGGACGGGGCTGAGAAACCCTGAGTCTGAAGAAAAGGATTGCTCAGATCCAAACGGTGGTATTGGGAATAATAGTGGCCAAAACCGGCGGTTTCCGGCTCCATTAACCCCACGATCTCAGCAAAACTGTAAGGCCCGGGCGTGCTTGCCACCACTGCAGCCATTGTCCATTGCTCGCAGGAGCTTGGATGAGTGGCCAAAGGCAAGTTCTGATGATGTTGGGGAGTGGCCTCAACCACCCACCCCAAGTGGGAGAGATATGAATAAGGGTGGAGATAGGCTGAAGCTTGATTTGTCTGCGATTCAGAAAAACCCGGATAAGAATGGTGGGCTTGTGAGGAGGGATAAGATTGCATTCTTTGATAAAGAGTGCTCTAAGGTTGCTGAACATATATATCTTGGGGGAGATGCGGATAGTCCATCTGAAGACATCACCAGTATACTTTATGATGTTTTTGACTACTTTGAGGATGTTAGAGAACAGGGGGGAAGGGTTTTTGTTCATTGTTGCCAAGGGGTGTCTCGATCCACTTCGCTTGTGATTGCATATCTTATGTGGAGAGAAGGGCAGAGTTTTGAAGATGCATTTCAGTATGTGAAAGCAGCTAGGGGAATTGCTGATCCAAATATGGGGTTTGCTTGCCAGTTGTTACAGTGTCAAAAAAGGGTCCATGCCTTTCCTCTTAGTCCAAGTTCATTACTGAGGATGTATAGAATTGCCCCACACTCTCCATATGATCCTTTGCATCTTGTTCCAAAAATGTTGAATGATCCTTCACCATCTGCTCTTGATTCTAGGGGTGCATTTATTGTACATGTACCTTCTGCAATCTATGTTTGGATTGGTAAAAATTGTGAGTTCATAATGGAAAGGGATGCCAGAGCTGCGGTTTGTCAGATTGTTCGTTATGAAAGAGTACAGGGGCCAATAACAGTGATCAAGGAAGGAGAAGAACAGTCATACTTCTGGGATGCTTTTTCTAACCTTTTGCCTTTGATGGATAAATCTGTTAATGGGGTGGAGGTTGGGAAATCAATGGTTGATGTTTGCCTTGGTGAGAGAAAAGTGGATTCATATAATGTTGATTATGAGATTTTCAAGAAAGCAATCTCCGGGGGTTTTGTGCCCCCTTTTGCATCATCTGAGACTGAACATGAAACCCACCTTCCTGTAAGAGAAAGCAGTTGGAGTGCGCTGAGGCGTAAGTTTGCCTTTGGCAATATGAAGGAGTTCATTTCGGCTCCCAGGTTATCCTTTCACAGGGTGTTTTCAGATTCTATGTTAATAGTCGAACTTGTTAGTGTTACTTCACAGCATTCTTCTCAATCAGTCTCCCTACCATTTAAAAGATTTCCCGTTTCCCTGGCTGAGCGCAGAGGTAGCTTGTCAAAGTCACTTACACTGCCTGTGTTGACTGATGAAACAAGGTTAAAAAATAATGTTTCAACTTCGGTTTCCTGTCAAGAAGATGCTGTGAGGATAGACGTCAACACTTGCTCTTTTTCTGAACCATGTTCTAGTGTAGAACATGTCTCAGAGTTCAAGAATGGTGCTAGAAATGGAGATGGGAACTCAACTGAACAATGCGAGTTGCGGATATCATCAGGTAGAGTAGCTAGTGATGATTCACATAAGGACATTGGTTTTGTCAGAAATGGTGATGAGACACTGAGAAATGATCCTTTGGAAGGAAGTCAGGATTCAACTGTCTTGACTGGAATGATGGAAGCTCATGGTGACCCAGTACAACCATTAGTATGTTGCTGGCCTAGCTTAGAAAAATTTGCATCCTTTGGTGCAGGTGATCTGGATTCCAAAGCTGCATTTGTTTTCTTCTTTCCAAGTACAGGTTTAGGAAAAGCTGAGGATAGGATTATATATATTTGGGTAGGAAGATCTTTCAATCATGGTAATACCCGGGCTCTACTAGATAGCAGCAGAGAGGTAGGTGATCTAGAAGAGATTGACTGGAACCAAGTTGGTTGTGATGTTCGTTCTCAGCTGGGTCTGCCAGAGGACACTGCCATTAAGATTGTTAAAGAAGATGAAGAGCCAGTAGAATTCTTTGCATTGTTGCATCCATTGTAG | 2178 | 43.99 | MVGKEDGSRVPYQVAGNRKTFWRSASWSSSRTGLRNPESEEKDCSDPNGGIGNNSGQNRRFPAPLTPRSQQNCKARACLPPLQPLSIARRSLDEWPKASSDDVGEWPQPPTPSGRDMNKGGDRLKLDLSAIQKNPDKNGGLVRRDKIAFFDKECSKVAEHIYLGGDADSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIVHVPSAIYVWIGKNCEFIMERDARAAVCQIVRYERVQGPITVIKEGEEQSYFWDAFSNLLPLMDKSVNGVEVGKSMVDVCLGERKVDSYNVDYEIFKKAISGGFVPPFASSETEHETHLPVRESSWSALRRKFAFGNMKEFISAPRLSFHRVFSDSMLIVELVSVTSQHSSQSVSLPFKRFPVSLAERRGSLSKSLTLPVLTDETRLKNNVSTSVSCQEDAVRIDVNTCSFSEPCSSVEHVSEFKNGARNGDGNSTEQCELRISSGRVASDDSHKDIGFVRNGDETLRNDPLEGSQDSTVLTGMMEAHGDPVQPLVCCWPSLEKFASFGAGDLDSKAAFVFFFPSTGLGKAEDRIIYIWVGRSFNHGNTRALLDSSREVGDLEEIDWNQVGCDVRSQLGLPEDTAIKIVKEDEEPVEFFALLHPL* | 726 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 2278833 | 2284853 | + | Vvi13g228 | Vvi13g228 | 774014 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi13g228 | 725 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 146 | 280 | IPR029021 | - | |
Vvi13g228 | 725 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 197 | 207 | IPR016130 | GO:0016311|GO:0016791 | |
Vvi13g228 | 725 | Gene3D | Protein tyrosine phosphatase superfamily | 145 | 260 | IPR029021 | - | |
Vvi13g228 | 725 | MobiDBLite | consensus disorder prediction | 93 | 120 | - | - | |
Vvi13g228 | 725 | MobiDBLite | consensus disorder prediction | 21 | 68 | - | - | |
Vvi13g228 | 725 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 172 | 233 | IPR000387 | GO:0016311|GO:0016791 | |
Vvi13g228 | 725 | CDD | DSP | 168 | 248 | - | - | |
Vvi13g228 | 725 | Gene3D | Severin | 264 | 359 | IPR029006 | - | |
Vvi13g228 | 725 | SMART | dsp_5 | 153 | 252 | IPR020422 | GO:0006470|GO:0008138 | |
Vvi13g228 | 725 | PANTHER | MKPA PROTEIN | 1 | 167 | - | - | |
Vvi13g228 | 725 | PANTHER | MKPA PROTEIN | 168 | 718 | - | - | |
Vvi13g228 | 725 | SUPERFAMILY | Actin depolymerizing proteins | 260 | 363 | - | - | |
Vvi13g228 | 725 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 95 | 255 | IPR020422 | GO:0006470|GO:0008138 | |
Vvi13g228 | 725 | Pfam | Dual specificity phosphatase, catalytic domain | 168 | 251 | IPR000340 | GO:0008138|GO:0016311 | |
Vvi13g228 | 725 | PANTHER | PROTEIN-TYROSINE-PHOSPHATASE MKP1 | 168 | 718 | - | - | |
Vvi13g228 | 725 | PANTHER | PROTEIN-TYROSINE-PHOSPHATASE MKP1 | 1 | 167 | - | - | |
Vvi13g228 | 725 | MobiDBLite | consensus disorder prediction | 48 | 68 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi13g228 | - | - | vvi:100260475 | 931.784 |