Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g244 ATGCCGATTAACAGAATCGCAATCGGGACGCCGGGGGAGGCCAGCCACCCCGACGCCCTCAAAGCCGCCCTTGCAGAGTTTTTCTCCATGCTCATCTTTGTTTTTGCTGGGGAAGGCTCGGGCATGGCTTTTAACAAGCTGACGGATAGTGGGTCGTCAACACCGGCGGGCCTGGTGGCAGCTGCTCTAGCCCATGGCTTCGCTCTGTTCGTGGCCGTTTCGGTGGGTGCGAACATATCTGGCGGACATGTGAACCCGGCCGTGACGTTTGGAGCCTTTATTGGCGGACACATAACGTTGTTGAGAGGCATTTTGTATTGGATTGCCCAGCTGCTGGGATCTGTCGTTGCATGCTTGCTGCTTAAGTTCTCCACCGGTGGATTGGAAACGTCTGCATTCTCCCTATCCTCAGGTGTGTCGGTGTGGAACGCCCTGGTTTTTGAGATTGTGATGACCTTCGGCCTGGTTTACACAGTGTATGCCACAGCAGTGGATCCAAAGAAGGGGAACTTGGGCATTATTGCACCTATTGCAATTGGTTTCATAGTTGGTGCCAACATATTAGCTGGTGGTGCATTTGATGGTGCTTCCATGAACCCAGCAGTGTCATTTGGGCCTGCTGTTGTTAGCTGGTCATGGGCCAACCACTGGGTCTACTGGGCCGGGCCTCTCATCGGTGCCGCCATTGCCGCCATCATCTACGATCTCATCTTCATTGACAGTACACATGAGCAACTGCCCACCACGGATTATTAG 756 53.84 MPINRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGEGSGMAFNKLTDSGSSTPAGLVAAALAHGFALFVAVSVGANISGGHVNPAVTFGAFIGGHITLLRGILYWIAQLLGSVVACLLLKFSTGGLETSAFSLSSGVSVWNALVFEIVMTFGLVYTVYATAVDPKKGNLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWSWANHWVYWAGPLIGAAIAAIIYDLIFIDSTHEQLPTTDY* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2428932 2430718 + Vvi13g244 Vvi13g244 774030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g244 251 Gene3D Glycerol uptake facilitator protein. 4 251 IPR023271 -
Vvi13g244 251 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g244 251 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g244 251 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g244 251 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g244 251 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g244 251 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g244 251 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g244 251 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi13g244 251 SUPERFAMILY Aquaporin-like 15 246 IPR023271 -
Vvi13g244 251 PANTHER AQUAPORIN-8 1 251 IPR034294 -
Vvi13g244 251 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vvi13g244 251 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 251 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g388 Vvi13g244 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g244 K09873 - vvi:100233003 476.092