Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g281 ATGGCCGGAAATGGAGGGGCTCCGGTGATCGGAATCGATCTCGGCACGACGTTCTCGTGCGTCGGAGTGTGGCAGTACGATCATGTTGAAATCATTGCGAATGACCAGGGCAACAGAACGACGCCATCTTACGTTGCTTTCACTAATACGGAGCGGTTGATAGGAGATGCTGCAAAGAACCAGGTCGCTATGAACCCTGTCAACACTGTGTTTGATGCAAAGCGTCTGATTGGTCGGAGGTTCAGTGATGCCTCAATTCAGGATGATATAAAACTCTGGCCGTTCAAGGTCATTGGTGGTATTGGTGACAAACCCACAATTGTGGTCACTTACAAAGAAGAAGAGAAAAAGTTTACCGCTCAAGAGATTTCATCTATGGTCCTCTCAAAGATGCGTGAGATTGCTGAAGTCTACCTTGGTTCAACAGTGGATAAGGCAGTTGTCACTGTCCCTGCTTACTTCAGTGACTCTCAGCGCCAGGCAACAAAGGATGCTGGGGCTATTGCTGGTCTTGATGTCGTGCGCATCATCAATGAACCCACTGCTGCTGCCATTGCCTATGGCCTTGACAAGAAGGGAGGGGAGGAAGGTCTATTTGAAGTGAGGGCCACTGCTGGAGACACCCATCTTGGAGGAGACGATTTTGACAACCGTGTTGATTTCTACACAACCATCACTCGTGCTAGATTTGAAGATCTCAACATGAACCTCTTTAGAAAGTGCATGGAGCCTGTGGATAAGTGTTTGAGGGATTCTAAGATAGGCAAAAGCAGTGTCCAAGATGTTGTCCTCGGTGCCATCTTAAGTGGAGAAGGTAATAAAAAGGTACAGGATCTGCTGCTCTTGGATGTTACTCCTCTGTCCCTTGGGTTGGAGACTGCTGGAGGTGTGATGACTGTACTGATTCCGAGGAACACCACTATTCCAACCAAGAAGGAGCAGGACTTTTCTACCTACTCAGACAACCAAACTAGTGTCTTGATCCAGGTCTATGAGGGTGAGAGAACAAGAAGTAGGGACAACAACTTGTTGGGCAAACCACAGGGCAGAAGAACAAAATCACTATCACCAATGACAAAGGGAGATTGTGGAAGCAAAGAACGCCTTAGAGAATTATGCCTACAACATGAGTTTGAGGACAAACTGAAGAAGTTTGAGGCCATCAGCAAACCAATCATTGGCAATATATATGAGGATACTGTACATCAGGTGGCTGATGGAGTTCTTGCTGCTGGTGGTCCTCCACCTGCTGCAAGTGCTGCCGTCCCAGTGGTTGAGGAAGTTGATTAA 1290 47.44 MAGNGGAPVIGIDLGTTFSCVGVWQYDHVEIIANDQGNRTTPSYVAFTNTERLIGDAAKNQVAMNPVNTVFDAKRLIGRRFSDASIQDDIKLWPFKVIGGIGDKPTIVVTYKEEEKKFTAQEISSMVLSKMREIAEVYLGSTVDKAVVTVPAYFSDSQRQATKDAGAIAGLDVVRIINEPTAAAIAYGLDKKGGEEGLFEVRATAGDTHLGGDDFDNRVDFYTTITRARFEDLNMNLFRKCMEPVDKCLRDSKIGKSSVQDVVLGAILSGEGNKKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQDFSTYSDNQTSVLIQVYEGERTRSRDNNLLGKPQGRRTKSLSPMTKGDCGSKERLRELCLQHEFEDKLKKFEAISKPIIGNIYEDTVHQVADGVLAAGGPPPAASAAVPVVEEVD* 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2720317 2723714 + Vvi13g281 Vvi13g281 774067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g281 429 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 196 219 - -
Vvi13g281 429 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 219 264 - -
Vvi13g281 429 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 265 346 - -
Vvi13g281 429 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 3 196 - -
Vvi13g281 429 Pfam Hsp70 protein 9 220 IPR013126 GO:0005524|GO:0140662
Vvi13g281 429 Pfam Hsp70 protein 264 346 IPR013126 GO:0005524|GO:0140662
Vvi13g281 429 Gene3D - 241 264 - -
Vvi13g281 429 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vvi13g281 429 SUPERFAMILY Actin-like ATPase domain 195 264 IPR043129 -
Vvi13g281 429 MobiDBLite consensus disorder prediction 339 363 - -
Vvi13g281 429 PRINTS 70kDa heat shock protein signature 8 21 - -
Vvi13g281 429 PRINTS 70kDa heat shock protein signature 36 48 - -
Vvi13g281 429 PRINTS 70kDa heat shock protein signature 58 66 - -
Vvi13g281 429 PRINTS 70kDa heat shock protein signature 146 166 - -
Vvi13g281 429 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 275 346 IPR029047 -
Vvi13g281 429 Gene3D - 4 221 - -
Vvi13g281 429 PANTHER HEAT SHOCK PROTEIN 70KDA 3 196 IPR013126 GO:0005524|GO:0140662
Vvi13g281 429 PANTHER HEAT SHOCK PROTEIN 70KDA 196 219 IPR013126 GO:0005524|GO:0140662
Vvi13g281 429 PANTHER HEAT SHOCK PROTEIN 70KDA 265 346 IPR013126 GO:0005524|GO:0140662
Vvi13g281 429 PANTHER HEAT SHOCK PROTEIN 70KDA 219 264 IPR013126 GO:0005524|GO:0140662
Vvi13g281 429 Gene3D Actin; Chain A, domain 4 222 240 - -
Vvi13g281 429 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Vvi13g281 429 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 267 362 IPR029047 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g711 Vvi13g281 ECH
Vvi6g426 Vvi13g281 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g281 K03283 - vvi:100261526 603.208