Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g300 ATGGTTTTCTCATCCGTTCCGGTTTATCTAGATCCACCCAACTGGCAACAGCAAGCAAATCATCAACCAGGAGGGAGCAATGACAATCCCCATCTTCCACCGCAGCAGGCGCCCCCGCCGCTGCCTCCAGTTGGCGGAGGAGGCAGTGGCGGTACTGGCACAATCAGGCCTGGTTCAATGGCCGATCGGGCTCGGCTAGCTAAGTTGCCACAGCCGGAGACGGCACTGAAATGTCCTCGATGCGAATCTACCAATACTAAGTTTTGCTACTTCAATAATTATAGCCTCTCTCAGCCTCGTCACTTTTGCAAGGCGTGTCGGCGCTACTGGACTAGAGGAGGTGCACTAAGGAACGTGCCTGTAGGGGGAGGTTGTCGGAGGAATAAGAGAAGCAAAGGCAATAGATCAAAGTCTCCAGTCACTGGCGAGCGTCAGGGTGGTTCCAGCTCCGCCAGTGCAGTTCCTTCCAATAGCTGCACGTCTGATATGATAGGCCATTTGCCCCCGCCACCACCACCACCCCAATTATCCTTTTTGCCCCCTTTGCATCACCTTGCTGACTACGGGGCCGGGGACATTGGCTTAAATTTCGGTGGAATTCAGCCACCTGTGGCAGTATCGGGTGGCGGTAACAGCGGAACTGATATAGAATTCCCGATTGGTAGCTGTTCAGGTGGTGGTGGGCCAATTTTATCAGGTGGGCTTGCCGAGCACTGGAGACTGCAGCAAGTGCAGCAGTTCCCTTTCTTGGCTGGATTGGAGCCACCTTCTGGGTTATATTCATTTGAGGGTGAAGGTACTGAGCCACCGAGTTACCTAGGGGGATCGGGCCATCTTCGAGCTAAGGCCTTGGATTCTGGAGTTACTCAGATGACCGCGGTGAAGATAGAAGAAAATCAAGGGTTGAATTTATCAAGGAATTTTTTGGGTCTTCCAGGAAATGATCAGTACTGGAGCGGCAATACATGGAATGATCTCTCTGGTTCTGTTAAAGCGAAATCAGCTCAAAGATAA 1014 52.07 MVFSSVPVYLDPPNWQQQANHQPGGSNDNPHLPPQQAPPPLPPVGGGGSGGTGTIRPGSMADRARLAKLPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSKGNRSKSPVTGERQGGSSSASAVPSNSCTSDMIGHLPPPPPPPQLSFLPPLHHLADYGAGDIGLNFGGIQPPVAVSGGGNSGTDIEFPIGSCSGGGGPILSGGLAEHWRLQQVQQFPFLAGLEPPSGLYSFEGEGTEPPSYLGGSGHLRAKALDSGVTQMTAVKIEENQGLNLSRNFLGLPGNDQYWSGNTWNDLSGSVKAKSAQR* 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3000465 3002046 - Vvi13g300 Vvi13g300 774086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g300 337 MobiDBLite consensus disorder prediction 120 179 - -
Vvi13g300 337 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Vvi13g300 337 MobiDBLite consensus disorder prediction 165 179 - -
Vvi13g300 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 330 IPR045174 GO:0003700|GO:0006355
Vvi13g300 337 MobiDBLite consensus disorder prediction 11 31 - -
Vvi13g300 337 MobiDBLite consensus disorder prediction 11 58 - -
Vvi13g300 337 MobiDBLite consensus disorder prediction 138 163 - -
Vvi13g300 337 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 5 330 - -
Vvi13g300 337 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Vvi13g300 337 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g716 Vvi13g300 ECH
Vvi6g427 Vvi13g300 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13869 PF02701 zf-Dof 1.50E-32 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g300 - - vvi:100258172 587.415