Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g300 ATGGTTTTCTCATCCGTTCCGGTTTATCTAGATCCACCCAACTGGCAACAGCAAGCAAATCATCAACCAGGAGGGAGCAATGACAATCCCCATCTTCCACCGCAGCAGGCGCCCCCGCCGCTGCCTCCAGTTGGCGGAGGAGGCAGTGGCGGTACTGGCACAATCAGGCCTGGTTCAATGGCCGATCGGGCTCGGCTAGCTAAGTTGCCACAGCCGGAGACGGCACTGAAATGTCCTCGATGCGAATCTACCAATACTAAGTTTTGCTACTTCAATAATTATAGCCTCTCTCAGCCTCGTCACTTTTGCAAGGCGTGTCGGCGCTACTGGACTAGAGGAGGTGCACTAAGGAACGTGCCTGTAGGGGGAGGTTGTCGGAGGAATAAGAGAAGCAAAGGCAATAGATCAAAGTCTCCAGTCACTGGCGAGCGTCAGGGTGGTTCCAGCTCCGCCAGTGCAGTTCCTTCCAATAGCTGCACGTCTGATATGATAGGCCATTTGCCCCCGCCACCACCACCACCCCAATTATCCTTTTTGCCCCCTTTGCATCACCTTGCTGACTACGGGGCCGGGGACATTGGCTTAAATTTCGGTGGAATTCAGCCACCTGTGGCAGTATCGGGTGGCGGTAACAGCGGAACTGATATAGAATTCCCGATTGGTAGCTGTTCAGGTGGTGGTGGGCCAATTTTATCAGGTGGGCTTGCCGAGCACTGGAGACTGCAGCAAGTGCAGCAGTTCCCTTTCTTGGCTGGATTGGAGCCACCTTCTGGGTTATATTCATTTGAGGGTGAAGGTACTGAGCCACCGAGTTACCTAGGGGGATCGGGCCATCTTCGAGCTAAGGCCTTGGATTCTGGAGTTACTCAGATGACCGCGGTGAAGATAGAAGAAAATCAAGGGTTGAATTTATCAAGGAATTTTTTGGGTCTTCCAGGAAATGATCAGTACTGGAGCGGCAATACATGGAATGATCTCTCTGGTTCTGTTAAAGCGAAATCAGCTCAAAGATAA 1014 52.07 MVFSSVPVYLDPPNWQQQANHQPGGSNDNPHLPPQQAPPPLPPVGGGGSGGTGTIRPGSMADRARLAKLPQPETALKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSKGNRSKSPVTGERQGGSSSASAVPSNSCTSDMIGHLPPPPPPPQLSFLPPLHHLADYGAGDIGLNFGGIQPPVAVSGGGNSGTDIEFPIGSCSGGGGPILSGGLAEHWRLQQVQQFPFLAGLEPPSGLYSFEGEGTEPPSYLGGSGHLRAKALDSGVTQMTAVKIEENQGLNLSRNFLGLPGNDQYWSGNTWNDLSGSVKAKSAQR* 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3000465 3002046 - Vvi13g300 Vvi13g300 774086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g300 337 MobiDBLite consensus disorder prediction 120 179 - -
Vvi13g300 337 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Vvi13g300 337 MobiDBLite consensus disorder prediction 165 179 - -
Vvi13g300 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 330 IPR045174 GO:0003700|GO:0006355
Vvi13g300 337 MobiDBLite consensus disorder prediction 11 31 - -
Vvi13g300 337 MobiDBLite consensus disorder prediction 11 58 - -
Vvi13g300 337 MobiDBLite consensus disorder prediction 138 163 - -
Vvi13g300 337 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 5 330 - -
Vvi13g300 337 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Vvi13g300 337 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g300 - - - vvi:100258172 587.415
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi8g716 Vvi13g300 ECH
Vvi6g427 Vvi13g300 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g300 . . . . . . . . Cmo04g00221 Cmo04g01262 Cma04g01188 Cma04g00219 Car04g01092 . . . Cpe01g00186 . . . . . . . Cla07g00304 Cam07g0322 Cec07g0366 Cco07g0327 Clacu07g0315 Cmu07g0371 Cre07g0681 . . . . . . Chy10g00546 Cme10g00889 . . . . . . . . . . . . . . . Cpe01g01095 . . . . . . . . . . . . . . . Lsi04g00882 Csa05g00707 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi10g214 . 21 174 C2C2-Dof Transcription Factor Family AT1G29160 58.4 3.5e-48 188.3
Vvi2g209 ECH 1 88 C2C2-Dof Transcription Factor Family AT1G64620 76.3 2.1e-39 160.2
Vvi10g214 . 21 174 C2C2-Dof Transcription Factor Family AT2G34140 58.0 3.8e-47 184.9
Vvi6g427 ECH 1 118 C2C2-Dof Transcription Factor Family AT2G37590 59.6 4.3e-39 159.1
Vvi13g300 ECH 1 128 C2C2-Dof Transcription Factor Family AT2G37590 64.5 2.1e-38 156.8
Vvi2g209 ECH 1 89 C2C2-Dof Transcription Factor Family AT4G24060 78.4 6.6e-43 171.8
Vvi17g562 ECH 111 331 C2C2-Dof Transcription Factor Family AT5G62430 50.9 7.5e-59 224.6
Vvi6g427 ECH 1 118 C2C2-Dof Transcription Factor Family AT5G02460 59.9 1.2e-40 164.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007574 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13869 PF02701 zf-Dof 1.50E-32 No_clan Vvi TF