Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g312 ATGGATGAACATTTGAGCGGATTATACCCGTCCGTGAATGGAATCAAGTTTAGTGAAGTCTACGGTTCAATTTTGTCGGGTGAGAATCCCAGTAGTGGGTTGGGATTGCAGGTGCCTTTTTTAGAGCAAAACAATGTATTCATTCCGCCATTTCAGCCCGATCCCAGCGGTGGTAATGTGGCCTCATGGTCGAGTGTGGGCGTGGAGGAAGATCCTCAGGAGGACTGTGATTTTAGTGATGTGGTTATTAGGTACGTAAGCCAATTGCTTATGGAGGAAGACGTGGAAGAGAAGACCCGCATGTTTCAGGAATCTTTGGCTCTTGAAGCCACTGAGAAATCGTTCTATGAAGTTATTGGGAAGGAGTATCCTGCTTCAAAGGATCACCACCTGTCTCCTAGCGCGGAGGAAAATCATGAAAACCCCACTGCAAATTATGGTGTTTATTCTAGTAGTACTACTAGTTATGGTAAATCGGTGGAAACTGGCTCATCAAACAGCCCCAATACTACCATAGATGGTTTTGGGGATCGTCCAATGAGTATCTTTAAGTCGAGGGGTAAGAAGAATTCTCATTTGGGGCATTTGGATTCTGAGGAAGAAAGGAGTAACAAACAGTCTGCAGTTTGTGATGAAGTGACAGTAACATCAGAAATGTTCGATCGGGTGTTGCTATGTGATGCAGATAAAGGTGAAGCTGCTCTCCGTGAATCCTTGCAAAATGAGGCAAGTAAGACTGTGCAGCAGGAGGGTGGATTGAAAGGATCTAATGGTGGAAGGTCTCGTGGATGGAAAAAGGGTGGTAAAAAGGATTTGGTGGATTTGAGAACTCTCTTGACTCTTTGCGCACAAGCTGTTGCAGCTGATGATCGGAGGAGCGCAAATGAGCAACTGAAGCAGATCAGACAACATGCTTGTCCTATGGGTGATGGGGTGCAGAGAATGGCTTACTATTTTGCCAATGGCCTTGAGGCTCGCTTGGCTGGTTCTGGTACTCAGATTTACAAAGGCATCCTTACCAAGCCATCCGCTGCCAATAAAGCAGCCCGACTCCATATTATTGATTTTGGTATTTTCTATGGTTTCCAATGGCCTTCCTTCATACAGCGCCTCTCATCTAGGCCTGGGGGACCTCCCAAGCTTCGGATTACTGGAATTGATCTTCCACAACCAGGCTTCCGACCTGTAGAAAGAGTTGAAGAGACAGGGCGTCGGTTAGCAAATTACGCCAGGAGTTTTAATGTTCCATTTGAGTTCAATGCCATAGCGCAAAAATGGGAAACAATTCAAATTGAGGATCTCAAAATCAACACTGGGGAGCTGGTTGTCGTGAACTGTCGATATAGATTTAGAAGCCTACTTGATGAAAGTGTGGTAGTGGAGAGTCCAAGGAATATTGTTCTGAATCTGATTAGGAAGATGAATCCAGATATTTTCATACAGGGGATTGTGAATGGAGCCTATGGCGTCCCATTCTTTATGACACGATTCCGAGAGGCTCTCTTCCACTTTTCTGCTTTATATGATATGCTTGAGACTAATGTCCCCCGCCAGAGCTCCGAGAGAATTGAGAGACCAGAGACATACAAGCAGTGGCAGGTTCGTAATGAGAGGGCTGGGTTCAGGCAGCTCCCTTTGGACCAGGAGATTGTTAAGATAGCGAAAAAGAGGGTGAAATCATGCTACCACAAAGATTTTATGATGGATGAAGATGGGCAATGGTTGCTACAGGGGTGGAAGGGACGCATCATTTATGCAATCTCTTCTTGGAAGCCTGCTCATTAA 1785 45.43 MDEHLSGLYPSVNGIKFSEVYGSILSGENPSSGLGLQVPFLEQNNVFIPPFQPDPSGGNVASWSSVGVEEDPQEDCDFSDVVIRYVSQLLMEEDVEEKTRMFQESLALEATEKSFYEVIGKEYPASKDHHLSPSAEENHENPTANYGVYSSSTTSYGKSVETGSSNSPNTTIDGFGDRPMSIFKSRGKKNSHLGHLDSEEERSNKQSAVCDEVTVTSEMFDRVLLCDADKGEAALRESLQNEASKTVQQEGGLKGSNGGRSRGWKKGGKKDLVDLRTLLTLCAQAVAADDRRSANEQLKQIRQHACPMGDGVQRMAYYFANGLEARLAGSGTQIYKGILTKPSAANKAARLHIIDFGIFYGFQWPSFIQRLSSRPGGPPKLRITGIDLPQPGFRPVERVEETGRRLANYARSFNVPFEFNAIAQKWETIQIEDLKINTGELVVVNCRYRFRSLLDESVVVESPRNIVLNLIRKMNPDIFIQGIVNGAYGVPFFMTRFREALFHFSALYDMLETNVPRQSSERIERPETYKQWQVRNERAGFRQLPLDQEIVKIAKKRVKSCYHKDFMMDEDGQWLLQGWKGRIIYAISSWKPAH* 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3150552 3152835 + Vvi13g312 Vvi13g312 774098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g312 594 MobiDBLite consensus disorder prediction 239 255 - -
Vvi13g312 594 ProSiteProfiles GRAS family profile. 266 591 IPR005202 -
Vvi13g312 594 MobiDBLite consensus disorder prediction 157 176 - -
Vvi13g312 594 MobiDBLite consensus disorder prediction 239 267 - -
Vvi13g312 594 MobiDBLite consensus disorder prediction 157 174 - -
Vvi13g312 594 MobiDBLite consensus disorder prediction 126 145 - -
Vvi13g312 594 MobiDBLite consensus disorder prediction 190 206 - -
Vvi13g312 594 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 34 141 IPR005202 -
Vvi13g312 594 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 519 592 IPR005202 -
Vvi13g312 594 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 185 345 IPR005202 -
Vvi13g312 594 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 345 522 IPR005202 -
Vvi13g312 594 MobiDBLite consensus disorder prediction 184 206 - -
Vvi13g312 594 PANTHER SCARECROW-LIKE PROTEIN 14 34 141 - -
Vvi13g312 594 PANTHER SCARECROW-LIKE PROTEIN 14 519 592 - -
Vvi13g312 594 PANTHER SCARECROW-LIKE PROTEIN 14 345 522 - -
Vvi13g312 594 PANTHER SCARECROW-LIKE PROTEIN 14 185 345 - -
Vvi13g312 594 Pfam GRAS domain family 344 522 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi8g744 Vvi13g312 ECH
Vvi6g468 Vvi13g312 ECH
Vvi6g470 Vvi13g312 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13870 PF03514 GRAS 2.00E-55 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g312 - - vvi:100264982 790.03