Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g313 ATGATATTTCAGCCATTTGCATCAAGCTCAAAACATCCTTCTTTGTGGCATATTGGATCGGAGGGGTGGTACCGATCTATCTCCAATTCTTCAAAAGAAAGTCAGCGCCTCCTGATTGAAACTTTATCTTTTTTTTTTCCTCTGGGCTTTCAGATTATATCAGAAAACCTACATGAGGACTGTGATTTTAACGATGTGGCTCTTAAGTACATAAGCCAGATACTTATGGAGGAAGACATGGAAGAGAAGACTTGCATGCTTCAGGAGTCTTTGGCGCTTGAAGCTACTGAGAAATCGTTCTACAACGTTATTGGAGAGAATTACCCTCCTTCAATTGATCATCATCGCGCCTCTTCCATTGATGAAATTCATGAAGACCAATATGAAAATAATTGTAGTAATGGTTTTGTGGATGAGCCTAAGAGTATCCTAGAGATTCCCAATATATTCAGTGGTAGTGAGTCTAGTTCACAGTTCAGGAGGGGGGCTGAGGAAGCTAGGAAATTCCTCCCAAATGGTAATGGCTTGTTTGATATGGGATTCAAGGTGGAGAAGAAGCATCCAAATGAGCACTTTGCAGAGGGGTCAAGGGGAAAAAGGAATTCTCATCCTGAGGATTTGGATGCAGAGGAGGATAGGAACACCAAGCTGTCTGCCATTTTTGATGAATTGACAGTCAGATCAGAAATGTTGGATCAGGTTTTGCTATGTGATGCATGTCAATCAAAAAGATCCAATTTGGGAAAATCCCGTGGTAGGAAAAAGGGTGGAAAAAAGGATGTGGTGGATTTGAGCAATCTGTTGACTCTATGTGCACAAGCTGTTGTTGCTGGTAATCAGAGGAGTGCCAATGATCAATTGAAGCTGATCAGACAGCATGCTTCTCCTATGGGTGATGGGATGCAGAGAATGGCATATTATTTTGTCAATGGCCTTGAGGCACGCTTGAGAGGCTCTGGAACTGAGATTTACAAAGGTAAGCTTCTTAATTTCTTCTCAAATACCACCATTAGAAAATTAGCTGAGAAAGCAGAGAGTCTCCATATCATAGATTTTGGTATTCTCTATGCAGAAAGGGTTCAAGAGACAGGCCGTCGGTTGGCAAACTATGCAAAGAGTTTCAATGTTCCATTTGAGTTCAATGCCATAGCCCAAAAGTGGGAAACAATTCAGGTTGAGGATCTCAAGATTGATACTGAGGATGTGCTTGTTGTGAACTGTCATTGTAGATTTAGAAACCTATTGGATGAAACCGTGACGGTGGAGAGCCCAAGGGATACTGTCCTGAATCTGATCAGGAAGCTGAATCCAGTTGTTTTCATACAAGGGATTGTGAATGGGGGCTATGGCGCCCCCTTCTTCAGGACACGATTCCGCGAAGCTCTCTTCCACTATTCTGCCTTGTTTGATATGCTTGAGCATATCGTGCCCCGCGAGAGATTGGAGAGGACAGATCGAGAGGCCAGAGAGTTACAGGCAGTGTCAGTTTCGCAACATGAGAGCTGGGTTTATGCAGCTTCCTCTGGACGAGGAGATTGTCAACAAAGCAAAGGAGAAGCTGAAGTTGTGCTATCACAAGGACTTTATACTTTACGAAGACGGCCCGTGGTTGCTACAAGGGTGGAAGGGAAGAATGCTTTTTGCAATCTCTTCTTGGAAGCCTGCTTAATCATTTCCATATTCAATATTCCTGATGAATGGAGACCAACTGATCTTGTGTACAACTGCAACTGGGAGTCTGAGAATAGAGCAAGGATAGTTAATGAAAATTGTTGGTTCACACAGCAAGAGCATGAAAGCGAGAAAAGAAAATATCAAGAAGGAAACAATCATAGTACAGATAGAGGCACGAAGAACCATCATCTAACCAGAGAGGTATCCTACACCGAGACTAGCAGCCAGAAGTATGCAATTACGCTGGGGTGTTACAACCATCATATTGCCACCCTGCCCTCTTCTTTCAGTTCTTCAAGTAGCGCCAATATGGTTCCTAATATATTCAATGACAGTGAGTCTGTTTTGCAGTTCAGGAGGGGGTTTGAGGAAGCTAGTAAATTCCTCCCAAATGGTAATGGTTTGTTGCTTGATTTGGCAAACCACCATACTGGGCTGTTATCTCCTGAGGAAATGGAAGCCAAACATTTTTATACATGCCATTGTGAATGCGGCCTGCGATTCCCCCTTCTTTATGACACGATTCCGAAAGGCTCTCTTCCACTATTCTGCTTTATGGTCAGTGGTTGCGACAAGGGAGGAAGGGACGTGTTACTTATGCCATGTCTTCTTGGAAGCCAGCTTATTAAATACACATTCATTTCTACTTATGAATGGTTAAGGTCATTGGATTCACCTTGTAGAATGCTTATGGAGGAAGACGTAGAAGAGAGGAATTGCATGTTTCAAGAGTCTTTGGCGCTTGAAGCCACTGAGAAATTGTTTTATGACATTATTAGGGAGAAGTATCTTCCTCCAGATGATCACCAGACAGCCCCTTTCATTGAGGAAAATTCTGGCAATTCAGATCAAAATGGTAGTATAGATTTCAGTACTTATAGTAGAAATGCTACTAGTGATGGTAACTGCGTGGAACTGGGGAGGAATTTTGATGTTGGAGAGTATAAATCCCCTCATGTTGCCCCCCAGCCCACTTGTCAGTCTTCTTTCAGTTCTTCAAGCAGTGCCAAAAGGGTTCCTAATATATTTAATGACAGCCCTAATAATGTGGTAGATAAGGTGAAGAAGAAGCATGCAGATGAGTATTTTAGAGACGGGTGGAGGGGAAAGAAGAAGTCTCATCCATGGGATTTGGAATCCAAAGAAGAGAGGAGTAGCAAGCAAGCTGCTTTTTATAATGGAATTACTGTGACATCAGAGATGTTTGATCGGGTGTTGCTATGTGGTCCAGAGGAAGATGAAGATGCTCTACGTGAAACCTGGCAAAATGAAACAACCAAGACTCTGCAGCAGGATGGTCAATCAAAAGGATCTGGAAAGTCCCATGGTAGGACGAAGGGCGGAAAAAAGGATTTGGTGGACTTCAGAAGTCTATTGACTCTTTGTGCACAAGCAGTTGCAGCTGACGATCGGACGAGCGCAAATAAGCAACTGAGGCAGATCAGACAGCATGCTTCTTCAATGGGTGACGGGATGCAGAGACTGGCTCACTATTTTGCCAACTCCCTTGAGGCACGCTTGTCTGGTTCCGGGGCCCAGATGTACAAAGCCATAACTACCAAACCATCAGCTGCCAATGTCTTGAAAATTTACCACCTACTTATTGTGGTGAGCCCCTTTGTGAAGGTCACTAATTTCTTCTCAAATAAGTCAATTGCAGAAGTAGCTGAGAAATCAGAGAGGCTCCATGTTATCGATTTTGGCATTCTCTATGGTTTCTCATGGCCTTCACTCATACAACGTCTCTCATCTAGACCAGGTGGGCCTCCCAAGCTTCGAATTACTGGGATTGATCTTCCAGAACCCGGTTTCCGACCTGCAGAAAGGCTTGAAGAGACAGGGCGTCGGTTAGCAGATTATGCCAAGTGTTTCAATGTTCCTTTTGAGTTCAACGCCCTAGCACAAAAGTTCGAAACGGTTCAAATTGAGGATCTCAAGCTAGACAATGACGAGGTTCTTGCGGTGAGATCCCGGTATAGATTTGGAAACCTCCCTGATGAAACCGTGGTAGCAGAGAGTCCAAGAGATAGTAATGCTAGGCCAGAGACATACAAGCAGTGGCAGGTTCGTAATGAGAGGATTGGGTTTAGGCAGCTCCCTTTGGACCGGGAGGTTGTTGAGGAGGCAAAGGAGTGGGTGAAATCATGCCTCCACAAGGATTTTATTATCGATGAAGATGGGCAATGGCTGAGGCTAGGGTGGAAGGGACGCATTACTCATGCCATGTCTTCTTGGAAGCCTGCTTGTTAA 3924 43.96 MIFQPFASSSKHPSLWHIGSEGWYRSISNSSKESQRLLIETLSFFFPLGFQIISENLHEDCDFNDVALKYISQILMEEDMEEKTCMLQESLALEATEKSFYNVIGENYPPSIDHHRASSIDEIHEDQYENNCSNGFVDEPKSILEIPNIFSGSESSSQFRRGAEEARKFLPNGNGLFDMGFKVEKKHPNEHFAEGSRGKRNSHPEDLDAEEDRNTKLSAIFDELTVRSEMLDQVLLCDACQSKRSNLGKSRGRKKGGKKDVVDLSNLLTLCAQAVVAGNQRSANDQLKLIRQHASPMGDGMQRMAYYFVNGLEARLRGSGTEIYKGKLLNFFSNTTIRKLAEKAESLHIIDFGILYAERVQETGRRLANYAKSFNVPFEFNAIAQKWETIQVEDLKIDTEDVLVVNCHCRFRNLLDETVTVESPRDTVLNLIRKLNPVVFIQGIVNGGYGAPFFRTRFREALFHYSALFDMLEHIVPRERLERTDREARELQAVSVSQHESWVYAASSGRGDCQQSKGEAEVVLSQGLYTLRRRPVVATRVEGKNAFCNLFLEACLIISIFNIPDEWRPTDLVYNCNWESENRARIVNENCWFTQQEHESEKRKYQEGNNHSTDRGTKNHHLTREVSYTETSSQKYAITLGCYNHHIATLPSSFSSSSSANMVPNIFNDSESVLQFRRGFEEASKFLPNGNGLLLDLANHHTGLLSPEEMEAKHFYTCHCECGLRFPLLYDTIPKGSLPLFCFMVSGCDKGGRDVLLMPCLLGSQLIKYTFISTYEWLRSLDSPCRMLMEEDVEERNCMFQESLALEATEKLFYDIIREKYLPPDDHQTAPFIEENSGNSDQNGSIDFSTYSRNATSDGNCVELGRNFDVGEYKSPHVAPQPTCQSSFSSSSSAKRVPNIFNDSPNNVVDKVKKKHADEYFRDGWRGKKKSHPWDLESKEERSSKQAAFYNGITVTSEMFDRVLLCGPEEDEDALRETWQNETTKTLQQDGQSKGSGKSHGRTKGGKKDLVDFRSLLTLCAQAVAADDRTSANKQLRQIRQHASSMGDGMQRLAHYFANSLEARLSGSGAQMYKAITTKPSAANVLKIYHLLIVVSPFVKVTNFFSNKSIAEVAEKSERLHVIDFGILYGFSWPSLIQRLSSRPGGPPKLRITGIDLPEPGFRPAERLEETGRRLADYAKCFNVPFEFNALAQKFETVQIEDLKLDNDEVLAVRSRYRFGNLPDETVVAESPRDSNARPETYKQWQVRNERIGFRQLPLDREVVEEAKEWVKSCLHKDFIIDEDGQWLRLGWKGRITHAMSSWKPAC* 1308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3153072 3175048 + Vvi13g313 Vvi13g313 774099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g313 1307 Pfam GRAS domain family 357 489 IPR005202 -
Vvi13g313 1307 Pfam GRAS domain family 1014 1235 IPR005202 -
Vvi13g313 1307 Pfam GRAS domain family 265 325 IPR005202 -
Vvi13g313 1307 PANTHER SCARECROW-LIKE PROTEIN 14 249 325 - -
Vvi13g313 1307 PANTHER SCARECROW-LIKE PROTEIN 14 357 484 - -
Vvi13g313 1307 PANTHER SCARECROW-LIKE PROTEIN 14 786 841 - -
Vvi13g313 1307 PANTHER SCARECROW-LIKE PROTEIN 14 181 241 - -
Vvi13g313 1307 MobiDBLite consensus disorder prediction 879 907 - -
Vvi13g313 1307 MobiDBLite consensus disorder prediction 190 211 - -
Vvi13g313 1307 ProSiteProfiles GRAS family profile. 255 579 IPR005202 -
Vvi13g313 1307 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 901 1234 IPR005202 -
Vvi13g313 1307 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 55 123 IPR005202 -
Vvi13g313 1307 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1238 1305 IPR005202 -
Vvi13g313 1307 MobiDBLite consensus disorder prediction 982 1007 - -
Vvi13g313 1307 MobiDBLite consensus disorder prediction 879 906 - -
Vvi13g313 1307 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 249 325 IPR005202 -
Vvi13g313 1307 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 357 484 IPR005202 -
Vvi13g313 1307 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 786 841 IPR005202 -
Vvi13g313 1307 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 181 241 IPR005202 -
Vvi13g313 1307 PANTHER SCARECROW-LIKE PROTEIN 14 55 123 - -
Vvi13g313 1307 MobiDBLite consensus disorder prediction 982 999 - -
Vvi13g313 1307 ProSiteProfiles GRAS family profile. 1004 1304 IPR005202 -
Vvi13g313 1307 PANTHER SCARECROW-LIKE PROTEIN 14 1238 1305 - -
Vvi13g313 1307 PANTHER SCARECROW-LIKE PROTEIN 14 901 1234 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g470 Vvi13g313 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13871 PF03514 GRAS 7.00E-64 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g313 - - vvi:100258258 767.689