Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi13g314 ATGCCAATAGCCAACTCCGATTATTTACTAGTTTCTTGTATGATTGAGGATTTTTACATGATAAAAAAAATGTTAAACTTCATTTTCAGTCATCACTGGGTCAAATGCCTTTCATTTTCAGAGTCTGAAAAGCACCAAAGACCAATTAACGAAGATCCTCTTGCGGACTCTGACTTTAGTGATATAGCTCTCAAGTACCTAAGCCAGATACTAATGGAGGAAGACCTAGAAGAAAAGACTGGCATGTTTAAGGAGTCTTTGGCGCTTGAGGCCACTGAGAAATTGTTCCATGACATCATTGGGGAGATATATCCTCCTCCAGGCGAGGAAAATTGTGGCAACCCATCTGAAAATGATAGTATAGATTTTAGTACTTATGGTTTTGTCGATGTTCCAATGAGTACCCTTAAGGTTCCCAATATATTTAATGACAGAGAATCTGTTTTGCAGTTCAGGAGGGGGTTTGAGGAAGCTAGTAAATTCCTTCCAAATCGTTCTGATTTGTCAGTTGATTCGGCAAACCATAATACAGAACTGTTAGTCCCTAATAATGTAATGAATAAAGTGGAGAAGAAGCATGGAGGGGAGCATTTTACAGATGGGTCAAGGGGAAAGAAGAAGACTCATCGAGATTTGGAATGTGAGGAAGTGAAGAGTAACAAGCAGAGTGCTGTTTATAATGAAATGACACTGACATCAGAAATGTTTGATCGAGTATTACTCTGTGATGCAGATGCATATGAAGCTGCCCTTCGTGAATCCTTTCAAAATGAAACAAGCAAGACTCTGCAGCAGGATGGTCAATCAAAAGGATCTAATGCTGGAAAGCCCCGAGGTTGGAAGAAGGGTGGGAAAAAGGATTTGGTGGACTTGAGAAGTCTATTAGCTCTTTGTGCACAAGCTGTGGCGGATGATGATCAGGTGAGCGCAGGTAAGCAACTGCAGCAGATCAGGCAGCATGCATCTCCAATGGGTGATGGGATGCAGAGACTGGCTCACTATTTCGCTAATGCACTTGAGGCACGCTTGGATGGCTCTGGATCCCAGATTTGCAAAGCGGTTATTACCAAACCATCAGGTGCCCATTTCTTGAAAAAAGCAGAGAGGCTCCATATTATTGATTTTGGTGTTCTCTACGGTTTCTCATGGCCTTCACTTTTACAACGTCTCTCAACTAGGCCTGGTGGGCCTCCCAAGCTTCGGATTACCGGGATTGATTTTCCAGAACCTGGCTTCCGACCGGCACAAAGGGGACCAGAGAGGATCGAGAGGCCAGAGACGTACAAGCAATGGCAGATCCGTAATGAGAGGGCTGGATTTAGGCAGCTCCCTTTGGACCAGGAGATTGTTAATATAGCAAAGGAGAGAGAAATAAAGAACAGGACAAAATCTGTTGACAGCGGGCATTTGGGCGGCCAGGATTTTCTCCTGCTCCGCCTCATCCTGAATTGCCAGAATCTTCTCTTTCTTTTGTGTGTCTGTCGCTGGTCCTCCATAATTTACAACTCATCGCCTCCTGTCTCAGACCTCATAGCACGTACTACTTGTCGTCTCTCTCGATTCCAGGGTTCAGGTATTGTTGTTGTGACTTTTGGAACGTAG 1602 44.01 MPIANSDYLLVSCMIEDFYMIKKMLNFIFSHHWVKCLSFSESEKHQRPINEDPLADSDFSDIALKYLSQILMEEDLEEKTGMFKESLALEATEKLFHDIIGEIYPPPGEENCGNPSENDSIDFSTYGFVDVPMSTLKVPNIFNDRESVLQFRRGFEEASKFLPNRSDLSVDSANHNTELLVPNNVMNKVEKKHGGEHFTDGSRGKKKTHRDLECEEVKSNKQSAVYNEMTLTSEMFDRVLLCDADAYEAALRESFQNETSKTLQQDGQSKGSNAGKPRGWKKGGKKDLVDLRSLLALCAQAVADDDQVSAGKQLQQIRQHASPMGDGMQRLAHYFANALEARLDGSGSQICKAVITKPSGAHFLKKAERLHIIDFGVLYGFSWPSLLQRLSTRPGGPPKLRITGIDFPEPGFRPAQRGPERIERPETYKQWQIRNERAGFRQLPLDQEIVNIAKEREIKNRTKSVDSGHLGGQDFLLLRLILNCQNLLFLLCVCRWSSIIYNSSPPVSDLIARTTCRLSRFQGSGIVVVTFGT* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3175765 3182587 + Vvi13g314 Vvi13g314 774100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi13g314 533 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 418 456 IPR005202 -
Vvi13g314 533 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 366 417 IPR005202 -
Vvi13g314 533 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 141 366 IPR005202 -
Vvi13g314 533 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 54 115 IPR005202 -
Vvi13g314 533 MobiDBLite consensus disorder prediction 193 214 - -
Vvi13g314 533 Pfam GRAS domain family 364 410 IPR005202 -
Vvi13g314 533 Pfam GRAS domain family 291 358 IPR005202 -
Vvi13g314 533 MobiDBLite consensus disorder prediction 255 283 - -
Vvi13g314 533 MobiDBLite consensus disorder prediction 255 272 - -
Vvi13g314 533 PANTHER SCARECROW-LIKE PROTEIN 14 141 366 - -
Vvi13g314 533 PANTHER SCARECROW-LIKE PROTEIN 14 54 115 - -
Vvi13g314 533 PANTHER SCARECROW-LIKE PROTEIN 14 366 417 - -
Vvi13g314 533 PANTHER SCARECROW-LIKE PROTEIN 14 418 456 - -
Vvi13g314 533 ProSiteProfiles GRAS family profile. 282 497 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi6g471 Vvi13g314 ECH
Vvi8g744 Vvi13g314 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13872 PF03514 GRAS 2.10E-14 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi13g314 - - vvi:100263396 684.1